Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.16■□□□□ 0.34
APOEP02649 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
APOEP02649 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.16■□□□□ 0.34
APOEP02649 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.16■□□□□ 0.34
APOEP02649 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
APOEP02649 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
APOEP02649 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
APOEP02649 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.15■□□□□ 0.34
APOEP02649 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.15■□□□□ 0.34
APOEP02649 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
APOEP02649 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.15■□□□□ 0.34
APOEP02649 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.15■□□□□ 0.34
APOEP02649 SPCS2P4-201ENST00000436160 681 ntBASIC17.15■□□□□ 0.34
APOEP02649 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.15■□□□□ 0.34
APOEP02649 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
APOEP02649 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.15■□□□□ 0.34
APOEP02649 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.15■□□□□ 0.34
APOEP02649 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.15■□□□□ 0.34
APOEP02649 KRT8P23-201ENST00000560090 1207 ntBASIC17.15■□□□□ 0.34
APOEP02649 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
APOEP02649 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.15■□□□□ 0.34
APOEP02649 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
APOEP02649 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.15■□□□□ 0.34
APOEP02649 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
APOEP02649 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
APOEP02649 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.15■□□□□ 0.34
APOEP02649 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.15■□□□□ 0.34
APOEP02649 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.15■□□□□ 0.34
APOEP02649 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.15■□□□□ 0.34
APOEP02649 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.15■□□□□ 0.34
APOEP02649 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 FLJ16779-201ENST00000612722 7638 ntBASIC17.15■□□□□ 0.34
APOEP02649 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
APOEP02649 AL513477.1-201ENST00000602865 2407 ntBASIC17.15■□□□□ 0.34
APOEP02649 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
APOEP02649 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
APOEP02649 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.14■□□□□ 0.33
APOEP02649 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 GGT3P-204ENST00000453783 1664 ntBASIC17.14■□□□□ 0.33
APOEP02649 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.14■□□□□ 0.33
APOEP02649 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
APOEP02649 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
APOEP02649 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.14■□□□□ 0.33
APOEP02649 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
APOEP02649 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
APOEP02649 PRYP6-201ENST00000514804 343 ntBASIC17.14■□□□□ 0.33
APOEP02649 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.14■□□□□ 0.33
APOEP02649 AC027307.2-201ENST00000591252 911 ntBASIC17.14■□□□□ 0.33
APOEP02649 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.14■□□□□ 0.33
APOEP02649 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.14■□□□□ 0.33
APOEP02649 AC092364.2-201ENST00000596710 2692 ntBASIC17.14■□□□□ 0.33
APOEP02649 UXT-AS1-201ENST00000590504 1525 ntBASIC17.14■□□□□ 0.33
APOEP02649 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC17.14■□□□□ 0.33
APOEP02649 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.14■□□□□ 0.33
APOEP02649 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.14■□□□□ 0.33
APOEP02649 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
APOEP02649 PCGF3-213ENST00000620529 1899 ntBASIC17.14■□□□□ 0.33
APOEP02649 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
APOEP02649 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.13■□□□□ 0.33
APOEP02649 LINC02199-201ENST00000506655 2702 ntBASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms