Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.72■□□□□ 0.11
SEMA3DO95025 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.72■□□□□ 0.11
SEMA3DO95025 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SEMA3DO95025 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.72■□□□□ 0.11
SEMA3DO95025 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.72■□□□□ 0.11
SEMA3DO95025 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.72■□□□□ 0.11
SEMA3DO95025 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SEMA3DO95025 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
SEMA3DO95025 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.72■□□□□ 0.11
SEMA3DO95025 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.72■□□□□ 0.11
SEMA3DO95025 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.72■□□□□ 0.11
SEMA3DO95025 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
SEMA3DO95025 KRT18P3-201ENST00000451602 1288 ntBASIC15.72■□□□□ 0.11
SEMA3DO95025 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.72■□□□□ 0.11
SEMA3DO95025 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.72■□□□□ 0.11
SEMA3DO95025 AC140113.2-201ENST00000604370 208 ntBASIC15.72■□□□□ 0.11
SEMA3DO95025 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
SEMA3DO95025 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
SEMA3DO95025 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SEMA3DO95025 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
SEMA3DO95025 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SEMA3DO95025 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.72■□□□□ 0.11
SEMA3DO95025 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SEMA3DO95025 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.71■□□□□ 0.11
SEMA3DO95025 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.71■□□□□ 0.11
SEMA3DO95025 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.71■□□□□ 0.11
SEMA3DO95025 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.71■□□□□ 0.11
SEMA3DO95025 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.71■□□□□ 0.11
SEMA3DO95025 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
SEMA3DO95025 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.71■□□□□ 0.11
SEMA3DO95025 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
SEMA3DO95025 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 AC074386.1-202ENST00000463561 864 ntBASIC15.71■□□□□ 0.11
SEMA3DO95025 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.71■□□□□ 0.11
SEMA3DO95025 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.71■□□□□ 0.11
SEMA3DO95025 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.71■□□□□ 0.11
SEMA3DO95025 AL161645.1-201ENST00000622716 1255 ntBASIC15.71■□□□□ 0.11
SEMA3DO95025 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
SEMA3DO95025 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.71■□□□□ 0.11
SEMA3DO95025 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SEMA3DO95025 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.71■□□□□ 0.11
SEMA3DO95025 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
SEMA3DO95025 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.71■□□□□ 0.11
SEMA3DO95025 U82695.1-201ENST00000635752 1889 ntBASIC15.71■□□□□ 0.11
SEMA3DO95025 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
SEMA3DO95025 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.7■□□□□ 0.1
SEMA3DO95025 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
SEMA3DO95025 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SEMA3DO95025 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms