Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 RAB43P1-201ENST00000561790 589 ntBASIC20.55■□□□□ 0.88
NPHP1O15259 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC20.55■□□□□ 0.88
NPHP1O15259 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC20.55■□□□□ 0.88
NPHP1O15259 AC013467.2-201ENST00000605472 835 ntBASIC20.55■□□□□ 0.88
NPHP1O15259 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
NPHP1O15259 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC20.55■□□□□ 0.88
NPHP1O15259 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.55■□□□□ 0.88
NPHP1O15259 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NPHP1O15259 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
NPHP1O15259 AC092068.3-201ENST00000587894 2016 ntBASIC20.54■□□□□ 0.88
NPHP1O15259 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP1O15259 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP1O15259 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
NPHP1O15259 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.54■□□□□ 0.88
NPHP1O15259 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP1O15259 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC20.54■□□□□ 0.88
NPHP1O15259 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC20.54■□□□□ 0.88
NPHP1O15259 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.54■□□□□ 0.88
NPHP1O15259 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC20.54■□□□□ 0.88
NPHP1O15259 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.54■□□□□ 0.88
NPHP1O15259 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC20.54■□□□□ 0.88
NPHP1O15259 ZNF890P-202ENST00000530367 1156 ntBASIC20.54■□□□□ 0.88
NPHP1O15259 AC055876.2-201ENST00000531834 546 ntBASIC20.54■□□□□ 0.88
NPHP1O15259 TPRX2P-201ENST00000535362 881 ntBASIC20.54■□□□□ 0.88
NPHP1O15259 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC20.54■□□□□ 0.88
NPHP1O15259 MIR6805-201ENST00000615055 62 ntBASIC20.54■□□□□ 0.88
NPHP1O15259 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
NPHP1O15259 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP1O15259 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP1O15259 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
NPHP1O15259 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP1O15259 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
NPHP1O15259 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
NPHP1O15259 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP1O15259 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC20.54■□□□□ 0.88
NPHP1O15259 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP1O15259 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP1O15259 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC20.54■□□□□ 0.88
NPHP1O15259 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP1O15259 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP1O15259 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP1O15259 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP1O15259 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
NPHP1O15259 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.54■□□□□ 0.88
NPHP1O15259 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.53■□□□□ 0.88
NPHP1O15259 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP1O15259 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP1O15259 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP1O15259 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP1O15259 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
NPHP1O15259 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP1O15259 ACA64.2-201ENST00000459014 129 ntBASIC20.53■□□□□ 0.88
NPHP1O15259 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC20.53■□□□□ 0.88
NPHP1O15259 SPDYE18-201ENST00000510091 1050 ntBASIC20.53■□□□□ 0.88
NPHP1O15259 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP1O15259 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
NPHP1O15259 KRT17P8-201ENST00000540749 863 ntBASIC20.53■□□□□ 0.88
NPHP1O15259 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP1O15259 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC20.53■□□□□ 0.88
NPHP1O15259 AL162274.1-201ENST00000617191 1098 ntBASIC20.53■□□□□ 0.88
NPHP1O15259 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC20.53■□□□□ 0.88
NPHP1O15259 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC20.53■□□□□ 0.88
NPHP1O15259 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP1O15259 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
NPHP1O15259 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP1O15259 AL023806.1-201ENST00000603994 1649 ntBASIC20.53■□□□□ 0.88
NPHP1O15259 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP1O15259 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC20.53■□□□□ 0.88
NPHP1O15259 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP1O15259 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms