Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP2Q9UDT6 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 AC008677.1-201ENST00000519230 1561 ntBASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 AC078925.2-201ENST00000624013 1973 ntBASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 AC015911.4-201ENST00000588022 1070 ntBASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 AL512652.2-201ENST00000625156 1716 ntBASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.41■□□□□ 0.7
CLIP2Q9UDT6 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 CNN2P2-201ENST00000443536 909 ntBASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 CNN2P3-201ENST00000450201 906 ntBASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 AL136317.3-201ENST00000618497 906 ntBASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 AL139011.1-202ENST00000642063 584 ntBASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 TUBB3P1-201ENST00000405796 1332 ntBASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP2Q9UDT6 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CLIP2Q9UDT6 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
CLIP2Q9UDT6 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.7
CLIP2Q9UDT6 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.39■□□□□ 0.7
CLIP2Q9UDT6 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
CLIP2Q9UDT6 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CLIP2Q9UDT6 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CLIP2Q9UDT6 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLIP2Q9UDT6 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLIP2Q9UDT6 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.39■□□□□ 0.69
CLIP2Q9UDT6 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.39■□□□□ 0.69
CLIP2Q9UDT6 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms