Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTN3Q9P232 REXO1L8P-201ENST00000604378 1897 ntBASIC17.52■□□□□ 0.4
CNTN3Q9P232 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTN3Q9P232 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTN3Q9P232 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTN3Q9P232 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTN3Q9P232 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CNTN3Q9P232 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTN3Q9P232 SPDYE17-201ENST00000412399 783 ntBASIC17.52■□□□□ 0.4
CNTN3Q9P232 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 AL139010.1-201ENST00000454878 894 ntBASIC17.52■□□□□ 0.4
CNTN3Q9P232 AL512638.1-201ENST00000457493 794 ntBASIC17.52■□□□□ 0.4
CNTN3Q9P232 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 MIR4745-201ENST00000577608 62 ntBASIC17.52■□□□□ 0.4
CNTN3Q9P232 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CNTN3Q9P232 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTN3Q9P232 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CNTN3Q9P232 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTN3Q9P232 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CNTN3Q9P232 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CNTN3Q9P232 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
CNTN3Q9P232 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CNTN3Q9P232 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CNTN3Q9P232 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CNTN3Q9P232 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CNTN3Q9P232 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.51■□□□□ 0.39
CNTN3Q9P232 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTN3Q9P232 AC087499.5-201ENST00000452760 1342 ntBASIC17.51■□□□□ 0.39
CNTN3Q9P232 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.51■□□□□ 0.39
CNTN3Q9P232 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTN3Q9P232 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CNTN3Q9P232 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CNTN3Q9P232 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.51■□□□□ 0.39
CNTN3Q9P232 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CNTN3Q9P232 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTN3Q9P232 MRPS18AP1-201ENST00000414458 589 ntBASIC17.51■□□□□ 0.39
CNTN3Q9P232 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.51■□□□□ 0.39
CNTN3Q9P232 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.51■□□□□ 0.39
CNTN3Q9P232 AC245100.5-201ENST00000452108 331 ntBASIC17.51■□□□□ 0.39
CNTN3Q9P232 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.51■□□□□ 0.39
CNTN3Q9P232 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.51■□□□□ 0.39
CNTN3Q9P232 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.51■□□□□ 0.39
CNTN3Q9P232 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.51■□□□□ 0.39
CNTN3Q9P232 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTN3Q9P232 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CNTN3Q9P232 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.51■□□□□ 0.39
CNTN3Q9P232 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.51■□□□□ 0.39
CNTN3Q9P232 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTN3Q9P232 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CNTN3Q9P232 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTN3Q9P232 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CNTN3Q9P232 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.51■□□□□ 0.39
CNTN3Q9P232 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CNTN3Q9P232 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.5■□□□□ 0.39
CNTN3Q9P232 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CNTN3Q9P232 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms