Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL12A1Q99715 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL12A1Q99715 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.05□□□□□ -0.16
COL12A1Q99715 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
COL12A1Q99715 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.05□□□□□ -0.16
COL12A1Q99715 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL12A1Q99715 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL12A1Q99715 AC044849.1-201ENST00000519737 1188 ntBASIC14.05□□□□□ -0.16
COL12A1Q99715 LY6E-208ENST00000520531 490 ntTSL 2 BASIC14.05□□□□□ -0.16
COL12A1Q99715 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.05□□□□□ -0.16
COL12A1Q99715 RN7SL574P-201ENST00000581512 297 ntBASIC14.05□□□□□ -0.16
COL12A1Q99715 RHOXF1P1-202ENST00000635473 501 ntBASIC14.05□□□□□ -0.16
COL12A1Q99715 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.05□□□□□ -0.16
COL12A1Q99715 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL12A1Q99715 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL12A1Q99715 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
COL12A1Q99715 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.05□□□□□ -0.16
COL12A1Q99715 COMP-202ENST00000425807 2292 ntTSL 2 BASIC14.05□□□□□ -0.16
COL12A1Q99715 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC14.05□□□□□ -0.16
COL12A1Q99715 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
COL12A1Q99715 AC133963.1-201ENST00000504166 1679 ntBASIC14.05□□□□□ -0.16
COL12A1Q99715 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
COL12A1Q99715 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.05□□□□□ -0.16
COL12A1Q99715 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.05□□□□□ -0.16
COL12A1Q99715 CLUHP6-201ENST00000580789 941 ntBASIC14.05□□□□□ -0.16
COL12A1Q99715 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.05□□□□□ -0.16
COL12A1Q99715 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC14.05□□□□□ -0.16
COL12A1Q99715 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
COL12A1Q99715 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.05□□□□□ -0.16
COL12A1Q99715 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC14.05□□□□□ -0.16
COL12A1Q99715 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.04□□□□□ -0.16
COL12A1Q99715 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC14.04□□□□□ -0.16
COL12A1Q99715 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
COL12A1Q99715 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
COL12A1Q99715 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC14.04□□□□□ -0.16
COL12A1Q99715 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.04□□□□□ -0.16
COL12A1Q99715 COX6A1P2-201ENST00000620597 330 ntBASIC14.04□□□□□ -0.16
COL12A1Q99715 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
COL12A1Q99715 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.04□□□□□ -0.16
COL12A1Q99715 INTS4P2-202ENST00000614726 2019 ntBASIC14.04□□□□□ -0.16
COL12A1Q99715 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.04□□□□□ -0.16
COL12A1Q99715 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
COL12A1Q99715 KRTAP10-13P-201ENST00000412914 571 ntBASIC14.04□□□□□ -0.16
COL12A1Q99715 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.04□□□□□ -0.16
COL12A1Q99715 AC106760.1-201ENST00000508690 800 ntBASIC14.04□□□□□ -0.16
COL12A1Q99715 CTBP2P4-201ENST00000513884 920 ntBASIC14.04□□□□□ -0.16
COL12A1Q99715 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC14.04□□□□□ -0.16
COL12A1Q99715 AC138951.2-201ENST00000623455 1161 ntBASIC14.04□□□□□ -0.16
COL12A1Q99715 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC14.04□□□□□ -0.16
COL12A1Q99715 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.04□□□□□ -0.16
COL12A1Q99715 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.04□□□□□ -0.16
COL12A1Q99715 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
COL12A1Q99715 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.04□□□□□ -0.16
COL12A1Q99715 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.04□□□□□ -0.16
COL12A1Q99715 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
COL12A1Q99715 CYP46A4P-201ENST00000414953 267 ntBASIC14.04□□□□□ -0.16
COL12A1Q99715 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
COL12A1Q99715 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.04□□□□□ -0.16
COL12A1Q99715 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
COL12A1Q99715 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL12A1Q99715 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC14.03□□□□□ -0.16
COL12A1Q99715 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
COL12A1Q99715 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL12A1Q99715 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.03□□□□□ -0.16
COL12A1Q99715 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC14.03□□□□□ -0.16
COL12A1Q99715 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL12A1Q99715 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC14.03□□□□□ -0.16
COL12A1Q99715 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.03□□□□□ -0.16
COL12A1Q99715 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC14.03□□□□□ -0.16
COL12A1Q99715 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL12A1Q99715 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
COL12A1Q99715 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL12A1Q99715 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL12A1Q99715 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC14.03□□□□□ -0.16
COL12A1Q99715 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL12A1Q99715 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.03□□□□□ -0.16
COL12A1Q99715 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL12A1Q99715 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL12A1Q99715 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL12A1Q99715 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL12A1Q99715 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL12A1Q99715 AC138649.2-201ENST00000615886 705 ntBASIC14.03□□□□□ -0.16
COL12A1Q99715 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL12A1Q99715 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms