Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CTHRC1Q96CG8 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CTHRC1Q96CG8 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
CTHRC1Q96CG8 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.12■□□□□ 0.01
CTHRC1Q96CG8 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CTHRC1Q96CG8 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.12■□□□□ 0.01
CTHRC1Q96CG8 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CTHRC1Q96CG8 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CTHRC1Q96CG8 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CTHRC1Q96CG8 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CTHRC1Q96CG8 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 AC112504.1-201ENST00000623415 1841 ntBASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 RPS8P6-201ENST00000426177 609 ntBASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 LINC02447-202ENST00000501888 2146 ntBASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.11■□□□□ 0.01
CTHRC1Q96CG8 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 SPDYE14P-201ENST00000442619 822 ntBASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 AC027612.4-201ENST00000605371 583 ntBASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.1■□□□□ 0.01
CTHRC1Q96CG8 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
CTHRC1Q96CG8 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTHRC1Q96CG8 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTHRC1Q96CG8 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.09■□□□□ 0.01
CTHRC1Q96CG8 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTHRC1Q96CG8 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CTHRC1Q96CG8 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTHRC1Q96CG8 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.09■□□□□ 0.01
CTHRC1Q96CG8 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
CTHRC1Q96CG8 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.09■□□□□ 0.01
CTHRC1Q96CG8 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CTHRC1Q96CG8 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CTHRC1Q96CG8 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms