Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFT1Q96AA3 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFT1Q96AA3 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFT1Q96AA3 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.08
RFT1Q96AA3 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFT1Q96AA3 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RFT1Q96AA3 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RFT1Q96AA3 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.58□□□□□ -0.08
RFT1Q96AA3 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFT1Q96AA3 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.58□□□□□ -0.08
RFT1Q96AA3 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFT1Q96AA3 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFT1Q96AA3 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
RFT1Q96AA3 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFT1Q96AA3 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC14.58□□□□□ -0.08
RFT1Q96AA3 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFT1Q96AA3 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 RBSN-204ENST00000449050 903 ntTSL 2 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 KRT18P35-201ENST00000510488 1269 ntBASIC14.57□□□□□ -0.08
RFT1Q96AA3 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
RFT1Q96AA3 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RFT1Q96AA3 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFT1Q96AA3 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFT1Q96AA3 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFT1Q96AA3 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 AC079776.2-201ENST00000641154 1609 ntBASIC14.56□□□□□ -0.08
RFT1Q96AA3 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFT1Q96AA3 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RFT1Q96AA3 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFT1Q96AA3 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFT1Q96AA3 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
RFT1Q96AA3 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
RFT1Q96AA3 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 TLE1-202ENST00000376484 666 ntTSL 3 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 COX5A-202ENST00000562233 441 ntTSL 3 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC14.56□□□□□ -0.08
RFT1Q96AA3 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms