Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 CALY-202ENST00000368555 783 ntTSL 2 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 RARRES2P9-201ENST00000565168 469 ntBASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NKX2-3Q8TAU0 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
NKX2-3Q8TAU0 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
NKX2-3Q8TAU0 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
NKX2-3Q8TAU0 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
NKX2-3Q8TAU0 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
NKX2-3Q8TAU0 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 AL592424.1-201ENST00000563624 1536 ntBASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 IFT20-216ENST00000588477 774 ntTSL 5 BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 TDG-209ENST00000544861 1387 ntTSL 2 BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
NKX2-3Q8TAU0 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 AC092580.3-201ENST00000430932 139 ntBASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 U91328.1-201ENST00000437528 223 ntBASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 PPP6R2P1-201ENST00000450880 1275 ntBASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 MIR4453-201ENST00000584019 89 ntBASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.25■□□□□ 0.67
NKX2-3Q8TAU0 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 AC098859.1-201ENST00000502915 1238 ntBASIC19.24■□□□□ 0.67
NKX2-3Q8TAU0 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms