Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 TSPY16P-201ENST00000449843 468 ntBASIC5.09□□□□□ -1.59
SYNE1Q8NF91 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 RARRES2P8-201ENST00000566335 367 ntBASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 INTS8-217ENST00000523731 4633 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AC009053.2-201ENST00000563701 2365 ntBASIC5.09□□□□□ -1.59
SYNE1Q8NF91 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AC005225.4-201ENST00000557330 545 ntBASIC5.09□□□□□ -1.59
SYNE1Q8NF91 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 HARS-204ENST00000438307 1789 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 DDT-204ENST00000404092 805 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 SPDYE18-201ENST00000510091 1050 ntBASIC5.09□□□□□ -1.59
SYNE1Q8NF91 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AC092053.1-201ENST00000605787 1936 ntBASIC5.09□□□□□ -1.59
SYNE1Q8NF91 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 GK-202ENST00000378941 458 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 SPTLC1P1-201ENST00000447199 261 ntBASIC5.09□□□□□ -1.59
SYNE1Q8NF91 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 POLD4-211ENST00000539074 714 ntTSL 3 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 NAA60-208ENST00000570819 833 ntTSL 2 BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
SYNE1Q8NF91 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms