Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC1BQ8NDV3 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 C2orf27AP3-201ENST00000434123 579 ntBASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 AC114501.1-201ENST00000445949 172 ntBASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 AC106760.1-201ENST00000508690 800 ntBASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 AL049840.4-201ENST00000602422 811 ntBASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 AL354718.3-201ENST00000616414 581 ntBASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 CR382287.1-201ENST00000623954 586 ntBASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC1BQ8NDV3 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 MPV17-204ENST00000399052 749 ntTSL 4 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 AC134915.1-201ENST00000426461 574 ntBASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 FTLP1-201ENST00000449155 526 ntBASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 AC008267.1-201ENST00000474858 1069 ntBASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 FAM86LP-201ENST00000478302 853 ntBASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 AC124283.3-201ENST00000570869 594 ntBASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 MIR4750-201ENST00000584564 56 ntBASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 KRT8P37-201ENST00000451609 1420 ntBASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC1BQ8NDV3 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms