Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 AL079307.3-201ENST00000556114 283 ntBASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HDDC3Q8N4P3 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 AC098614.1-201ENST00000368528 745 ntBASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 TP53TG3HP-202ENST00000569755 579 ntBASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 AC087499.5-201ENST00000452760 1342 ntBASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 RNF216P1-203ENST00000404404 2427 ntBASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HDDC3Q8N4P3 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms