Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 MED22-202ENST00000371999 987 ntTSL 3 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 AP001005.1-201ENST00000571755 1248 ntBASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 AP005117.1-201ENST00000584346 1413 ntBASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
DEPDC4Q8N2C3 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.33■□□□□ 0.05
DEPDC4Q8N2C3 AC006449.6-201ENST00000612330 2296 ntBASIC15.33■□□□□ 0.05
DEPDC4Q8N2C3 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.05
DEPDC4Q8N2C3 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
DEPDC4Q8N2C3 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 AC006277.1-201ENST00000624348 1610 ntBASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 ACTG1P4-201ENST00000425123 1122 ntBASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 KRT18P67-201ENST00000432816 1264 ntBASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 RBSN-204ENST00000449050 903 ntTSL 2 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 AC022532.1-201ENST00000624563 1728 ntBASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.33■□□□□ 0.04
DEPDC4Q8N2C3 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 IL12A-202ENST00000466512 1283 ntTSL 3 BASIC15.32■□□□□ 0.04
DEPDC4Q8N2C3 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms