Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 BTBD7P1-201ENST00000447253 1453 ntBASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
RNFT1Q5M7Z0 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 AC080080.1-201ENST00000625121 2420 ntBASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
RNFT1Q5M7Z0 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 COX5BP8-201ENST00000416911 349 ntBASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 TP53TG3HP-202ENST00000569755 579 ntBASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 AL136982.4-201ENST00000437689 1740 ntBASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNFT1Q5M7Z0 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNFT1Q5M7Z0 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNFT1Q5M7Z0 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.65□□□□□ -0.06
RNFT1Q5M7Z0 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNFT1Q5M7Z0 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNFT1Q5M7Z0 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
RNFT1Q5M7Z0 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNFT1Q5M7Z0 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNFT1Q5M7Z0 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms