Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 AL133373.2-201ENST00000623187 2828 ntBASIC18.48■□□□□ 0.55
CCNA1P78396 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.48■□□□□ 0.55
CCNA1P78396 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
CCNA1P78396 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CCNA1P78396 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CCNA1P78396 AL136982.4-201ENST00000437689 1740 ntBASIC18.47■□□□□ 0.55
CCNA1P78396 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.47■□□□□ 0.55
CCNA1P78396 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.47■□□□□ 0.55
CCNA1P78396 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 TMEM14DP-201ENST00000422205 345 ntBASIC18.47■□□□□ 0.55
CCNA1P78396 HIST3H2BA-201ENST00000436555 524 ntBASIC18.47■□□□□ 0.55
CCNA1P78396 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC18.47■□□□□ 0.55
CCNA1P78396 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.47■□□□□ 0.55
CCNA1P78396 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC18.47■□□□□ 0.55
CCNA1P78396 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC18.47■□□□□ 0.55
CCNA1P78396 AC133552.6-201ENST00000613406 534 ntBASIC18.47■□□□□ 0.55
CCNA1P78396 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CCNA1P78396 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CCNA1P78396 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CCNA1P78396 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CCNA1P78396 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.47■□□□□ 0.55
CCNA1P78396 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
CCNA1P78396 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
CCNA1P78396 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.47■□□□□ 0.55
CCNA1P78396 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.47■□□□□ 0.55
CCNA1P78396 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CCNA1P78396 AL603756.1-201ENST00000606511 2163 ntBASIC18.47■□□□□ 0.55
CCNA1P78396 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCNA1P78396 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNA1P78396 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CCNA1P78396 AC141586.5-201ENST00000624546 2050 ntBASIC18.46■□□□□ 0.55
CCNA1P78396 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNA1P78396 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNA1P78396 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNA1P78396 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNA1P78396 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CCNA1P78396 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNA1P78396 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNA1P78396 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNA1P78396 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.46■□□□□ 0.55
CCNA1P78396 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCNA1P78396 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCNA1P78396 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC18.46■□□□□ 0.55
CCNA1P78396 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC18.46■□□□□ 0.55
CCNA1P78396 AC092552.1-201ENST00000547243 906 ntBASIC18.46■□□□□ 0.55
CCNA1P78396 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.46■□□□□ 0.55
CCNA1P78396 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC18.46■□□□□ 0.55
CCNA1P78396 COX11-210ENST00000639671 696 ntBASIC18.46■□□□□ 0.55
CCNA1P78396 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNA1P78396 LETM1P2-201ENST00000597330 2178 ntBASIC18.46■□□□□ 0.55
CCNA1P78396 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.46■□□□□ 0.55
CCNA1P78396 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.46■□□□□ 0.55
CCNA1P78396 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.46■□□□□ 0.55
CCNA1P78396 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNA1P78396 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCNA1P78396 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
CCNA1P78396 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
CCNA1P78396 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
CCNA1P78396 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.46■□□□□ 0.54
CCNA1P78396 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
CCNA1P78396 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
CCNA1P78396 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCNA1P78396 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.45■□□□□ 0.54
CCNA1P78396 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCNA1P78396 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCNA1P78396 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCNA1P78396 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCNA1P78396 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.45■□□□□ 0.54
CCNA1P78396 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CCNA1P78396 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC18.45■□□□□ 0.54
CCNA1P78396 KRT43P-201ENST00000434019 910 ntBASIC18.45■□□□□ 0.54
CCNA1P78396 KRT223P-202ENST00000449164 1292 ntBASIC18.45■□□□□ 0.54
CCNA1P78396 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CCNA1P78396 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC18.45■□□□□ 0.54
CCNA1P78396 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCNA1P78396 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.45■□□□□ 0.54
CCNA1P78396 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.45■□□□□ 0.54
CCNA1P78396 AC008735.3-201ENST00000596646 500 ntBASIC18.45■□□□□ 0.54
CCNA1P78396 PFAS-212ENST00000625942 396 ntTSL 5 BASIC18.45■□□□□ 0.54
CCNA1P78396 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms