Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.12■□□□□ 0.17
PKNOX1P55347 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PKNOX1P55347 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PKNOX1P55347 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.12■□□□□ 0.17
PKNOX1P55347 IGHV3-65-201ENST00000523210 341 ntBASIC16.12■□□□□ 0.17
PKNOX1P55347 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.12■□□□□ 0.17
PKNOX1P55347 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.12■□□□□ 0.17
PKNOX1P55347 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.12■□□□□ 0.17
PKNOX1P55347 IFNL4P1-201ENST00000607083 540 ntBASIC16.12■□□□□ 0.17
PKNOX1P55347 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.12■□□□□ 0.17
PKNOX1P55347 PGM5P2-202ENST00000637225 1043 ntBASIC16.12■□□□□ 0.17
PKNOX1P55347 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.12■□□□□ 0.17
PKNOX1P55347 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.12■□□□□ 0.17
PKNOX1P55347 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PKNOX1P55347 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.12■□□□□ 0.17
PKNOX1P55347 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.12■□□□□ 0.17
PKNOX1P55347 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
PKNOX1P55347 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PKNOX1P55347 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PKNOX1P55347 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.11■□□□□ 0.17
PKNOX1P55347 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.11■□□□□ 0.17
PKNOX1P55347 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PKNOX1P55347 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
PKNOX1P55347 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.11■□□□□ 0.17
PKNOX1P55347 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.11■□□□□ 0.17
PKNOX1P55347 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.11■□□□□ 0.17
PKNOX1P55347 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.11■□□□□ 0.17
PKNOX1P55347 DUSP5P1-201ENST00000441325 1139 ntBASIC16.11■□□□□ 0.17
PKNOX1P55347 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.11■□□□□ 0.17
PKNOX1P55347 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.11■□□□□ 0.17
PKNOX1P55347 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.11■□□□□ 0.17
PKNOX1P55347 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
PKNOX1P55347 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.11■□□□□ 0.17
PKNOX1P55347 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.11■□□□□ 0.17
PKNOX1P55347 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PKNOX1P55347 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 AC008735.5-201ENST00000623544 497 ntBASIC16.11■□□□□ 0.17
PKNOX1P55347 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.11■□□□□ 0.17
PKNOX1P55347 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PKNOX1P55347 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PKNOX1P55347 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.11■□□□□ 0.17
PKNOX1P55347 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.11■□□□□ 0.17
PKNOX1P55347 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PKNOX1P55347 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
PKNOX1P55347 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
PKNOX1P55347 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PKNOX1P55347 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.11■□□□□ 0.17
PKNOX1P55347 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PKNOX1P55347 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKNOX1P55347 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.1■□□□□ 0.17
PKNOX1P55347 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKNOX1P55347 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKNOX1P55347 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKNOX1P55347 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKNOX1P55347 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKNOX1P55347 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.1■□□□□ 0.17
PKNOX1P55347 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKNOX1P55347 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PKNOX1P55347 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.1■□□□□ 0.17
PKNOX1P55347 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.1■□□□□ 0.17
PKNOX1P55347 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKNOX1P55347 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.1■□□□□ 0.17
PKNOX1P55347 RNPS1P1-201ENST00000507437 918 ntBASIC16.1■□□□□ 0.17
PKNOX1P55347 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.1■□□□□ 0.17
PKNOX1P55347 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.1■□□□□ 0.17
PKNOX1P55347 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.1■□□□□ 0.17
PKNOX1P55347 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.1■□□□□ 0.17
PKNOX1P55347 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms