Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CDH3P22223 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH3P22223 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH3P22223 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CDH3P22223 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH3P22223 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
CDH3P22223 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH3P22223 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH3P22223 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CDH3P22223 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH3P22223 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
CDH3P22223 AL603756.1-201ENST00000606511 2163 ntBASIC16.11■□□□□ 0.17
CDH3P22223 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CDH3P22223 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CDH3P22223 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CDH3P22223 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CDH3P22223 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
CDH3P22223 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.11■□□□□ 0.17
CDH3P22223 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.11■□□□□ 0.17
CDH3P22223 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CDH3P22223 RARRES2P8-201ENST00000566335 367 ntBASIC16.11■□□□□ 0.17
CDH3P22223 MIR4492-201ENST00000581627 80 ntBASIC16.11■□□□□ 0.17
CDH3P22223 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.11■□□□□ 0.17
CDH3P22223 AC004835.2-201ENST00000603762 682 ntBASIC16.11■□□□□ 0.17
CDH3P22223 AC105339.1-204ENST00000636249 355 ntBASIC16.11■□□□□ 0.17
CDH3P22223 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.11■□□□□ 0.17
CDH3P22223 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
CDH3P22223 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH3P22223 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.11■□□□□ 0.17
CDH3P22223 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH3P22223 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
CDH3P22223 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH3P22223 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
CDH3P22223 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH3P22223 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.1■□□□□ 0.17
CDH3P22223 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CDH3P22223 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.1■□□□□ 0.17
CDH3P22223 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CDH3P22223 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CDH3P22223 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.1■□□□□ 0.17
CDH3P22223 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.1■□□□□ 0.17
CDH3P22223 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 PMS2P4-201ENST00000412466 1052 ntBASIC16.1■□□□□ 0.17
CDH3P22223 TFAMP1-201ENST00000412727 736 ntBASIC16.1■□□□□ 0.17
CDH3P22223 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.1■□□□□ 0.17
CDH3P22223 AC109635.5-201ENST00000533593 962 ntBASIC16.1■□□□□ 0.17
CDH3P22223 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.1■□□□□ 0.17
CDH3P22223 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.1■□□□□ 0.17
CDH3P22223 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CDH3P22223 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.1■□□□□ 0.17
CDH3P22223 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.1■□□□□ 0.17
CDH3P22223 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.1■□□□□ 0.17
CDH3P22223 AL513210.1-201ENST00000629608 234 ntBASIC16.1■□□□□ 0.17
CDH3P22223 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.1■□□□□ 0.17
CDH3P22223 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.1■□□□□ 0.17
CDH3P22223 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.1■□□□□ 0.17
CDH3P22223 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CDH3P22223 AC105917.1-201ENST00000506637 2539 ntBASIC16.1■□□□□ 0.17
CDH3P22223 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CDH3P22223 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CDH3P22223 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.1■□□□□ 0.17
CDH3P22223 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
CDH3P22223 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms