Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC18.3■□□□□ 0.52
COL11A1P12107 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.3■□□□□ 0.52
COL11A1P12107 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.3■□□□□ 0.52
COL11A1P12107 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC18.3■□□□□ 0.52
COL11A1P12107 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC18.3■□□□□ 0.52
COL11A1P12107 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL11A1P12107 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL11A1P12107 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL11A1P12107 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
COL11A1P12107 AC106886.4-201ENST00000623557 2502 ntBASIC18.29■□□□□ 0.52
COL11A1P12107 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.29■□□□□ 0.52
COL11A1P12107 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.29■□□□□ 0.52
COL11A1P12107 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
COL11A1P12107 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
COL11A1P12107 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC18.29■□□□□ 0.52
COL11A1P12107 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.29■□□□□ 0.52
COL11A1P12107 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.29■□□□□ 0.52
COL11A1P12107 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.29■□□□□ 0.52
COL11A1P12107 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.29■□□□□ 0.52
COL11A1P12107 AP005482.1-201ENST00000563722 1273 ntBASIC18.29■□□□□ 0.52
COL11A1P12107 MIR4259-201ENST00000584466 101 ntBASIC18.29■□□□□ 0.52
COL11A1P12107 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC18.29■□□□□ 0.52
COL11A1P12107 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC18.29■□□□□ 0.52
COL11A1P12107 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18.29■□□□□ 0.52
COL11A1P12107 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL11A1P12107 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL11A1P12107 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
COL11A1P12107 FZD10-202ENST00000539839 3282 ntBASIC18.29■□□□□ 0.52
COL11A1P12107 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
COL11A1P12107 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 AGGF1P2-201ENST00000426656 2106 ntBASIC18.28■□□□□ 0.52
COL11A1P12107 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
COL11A1P12107 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
COL11A1P12107 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
COL11A1P12107 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18.28■□□□□ 0.52
COL11A1P12107 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC18.28■□□□□ 0.52
COL11A1P12107 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.28■□□□□ 0.52
COL11A1P12107 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
COL11A1P12107 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
COL11A1P12107 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.28■□□□□ 0.52
COL11A1P12107 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.28■□□□□ 0.52
COL11A1P12107 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC18.28■□□□□ 0.52
COL11A1P12107 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.28■□□□□ 0.52
COL11A1P12107 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL11A1P12107 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.28■□□□□ 0.52
COL11A1P12107 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.28■□□□□ 0.52
COL11A1P12107 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL11A1P12107 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL11A1P12107 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
COL11A1P12107 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL11A1P12107 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL11A1P12107 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL11A1P12107 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL11A1P12107 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.27■□□□□ 0.52
COL11A1P12107 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.27■□□□□ 0.52
COL11A1P12107 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL11A1P12107 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL11A1P12107 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC18.27■□□□□ 0.52
COL11A1P12107 RPL13P2-201ENST00000440687 659 ntBASIC18.27■□□□□ 0.52
COL11A1P12107 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.27■□□□□ 0.52
COL11A1P12107 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC18.27■□□□□ 0.52
COL11A1P12107 MIR6775-201ENST00000617557 69 ntBASIC18.27■□□□□ 0.52
COL11A1P12107 AL033527.5-201ENST00000641382 801 ntBASIC18.27■□□□□ 0.52
COL11A1P12107 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.51
COL11A1P12107 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.51
COL11A1P12107 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.27■□□□□ 0.51
COL11A1P12107 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL11A1P12107 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms