Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC7.15□□□□□ -1.26
USH2AO75445 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.26
USH2AO75445 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC7.15□□□□□ -1.26
USH2AO75445 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC7.15□□□□□ -1.26
USH2AO75445 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC7.15□□□□□ -1.26
USH2AO75445 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC7.15□□□□□ -1.26
USH2AO75445 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC7.15□□□□□ -1.26
USH2AO75445 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC7.15□□□□□ -1.26
USH2AO75445 AC027139.1-201ENST00000565286 951 ntBASIC7.15□□□□□ -1.26
USH2AO75445 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC7.15□□□□□ -1.26
USH2AO75445 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC7.15□□□□□ -1.26
USH2AO75445 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC7.15□□□□□ -1.26
USH2AO75445 MIR6842-201ENST00000612539 65 ntBASIC7.15□□□□□ -1.26
USH2AO75445 MME-218ENST00000625667 363 ntTSL 5 BASIC7.15□□□□□ -1.26
USH2AO75445 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC7.15□□□□□ -1.26
USH2AO75445 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC7.15□□□□□ -1.26
USH2AO75445 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC7.15□□□□□ -1.26
USH2AO75445 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC7.15□□□□□ -1.26
USH2AO75445 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC7.15□□□□□ -1.26
USH2AO75445 HSPB1P2-201ENST00000448722 546 ntBASIC7.15□□□□□ -1.26
USH2AO75445 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC7.15□□□□□ -1.26
USH2AO75445 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC7.15□□□□□ -1.26
USH2AO75445 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC7.15□□□□□ -1.26
USH2AO75445 ACR-203ENST00000529621 708 ntTSL 5 BASIC7.15□□□□□ -1.26
USH2AO75445 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC7.15□□□□□ -1.26
USH2AO75445 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC7.15□□□□□ -1.26
USH2AO75445 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC7.15□□□□□ -1.26
USH2AO75445 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC7.15□□□□□ -1.26
USH2AO75445 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC7.15□□□□□ -1.26
USH2AO75445 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC7.15□□□□□ -1.26
USH2AO75445 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC7.15□□□□□ -1.26
USH2AO75445 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 PTPA-218ENST00000435132 618 ntTSL 2 BASIC7.15□□□□□ -1.26
USH2AO75445 HOMER2P2-201ENST00000451621 847 ntBASIC7.15□□□□□ -1.26
USH2AO75445 MDH2-205ENST00000461263 648 ntTSL 2 BASIC7.15□□□□□ -1.26
USH2AO75445 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC7.15□□□□□ -1.26
USH2AO75445 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC7.15□□□□□ -1.26
USH2AO75445 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
USH2AO75445 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC7.15□□□□□ -1.26
USH2AO75445 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
USH2AO75445 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
USH2AO75445 CROCCP2-202ENST00000412962 2773 ntBASIC7.15□□□□□ -1.27
USH2AO75445 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC7.15□□□□□ -1.27
USH2AO75445 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
USH2AO75445 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC7.15□□□□□ -1.27
USH2AO75445 AL133267.1-201ENST00000398220 340 ntBASIC7.15□□□□□ -1.27
USH2AO75445 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.27
USH2AO75445 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC7.15□□□□□ -1.27
USH2AO75445 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC7.15□□□□□ -1.27
USH2AO75445 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC7.15□□□□□ -1.27
USH2AO75445 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
USH2AO75445 FOS-204ENST00000554617 796 ntTSL 2 BASIC7.15□□□□□ -1.27
USH2AO75445 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC7.15□□□□□ -1.27
USH2AO75445 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
USH2AO75445 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC7.15□□□□□ -1.27
USH2AO75445 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.27
USH2AO75445 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
USH2AO75445 AC093503.3-201ENST00000624917 2352 ntBASIC7.15□□□□□ -1.27
USH2AO75445 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC7.15□□□□□ -1.27
USH2AO75445 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
USH2AO75445 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC7.15□□□□□ -1.27
USH2AO75445 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
USH2AO75445 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
USH2AO75445 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC7.14□□□□□ -1.27
USH2AO75445 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
USH2AO75445 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
USH2AO75445 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC7.14□□□□□ -1.27
USH2AO75445 VMO1-203ENST00000416307 712 ntTSL 2 BASIC7.14□□□□□ -1.27
USH2AO75445 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC7.14□□□□□ -1.27
USH2AO75445 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
USH2AO75445 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
USH2AO75445 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC7.14□□□□□ -1.27
USH2AO75445 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
USH2AO75445 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC7.14□□□□□ -1.27
USH2AO75445 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC7.14□□□□□ -1.27
USH2AO75445 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC7.14□□□□□ -1.27
USH2AO75445 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
USH2AO75445 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
USH2AO75445 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
USH2AO75445 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
USH2AO75445 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC7.14□□□□□ -1.27
USH2AO75445 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
USH2AO75445 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC7.14□□□□□ -1.27
USH2AO75445 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms