Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.88■□□□□ 0.45
CLDN3O15551 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 HLA-H-201ENST00000383620 1096 ntBASIC17.88■□□□□ 0.45
CLDN3O15551 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.88■□□□□ 0.45
CLDN3O15551 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 RARRES2P9-201ENST00000565168 469 ntBASIC17.88■□□□□ 0.45
CLDN3O15551 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.88■□□□□ 0.45
CLDN3O15551 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.88■□□□□ 0.45
CLDN3O15551 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CLDN3O15551 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
CLDN3O15551 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CLDN3O15551 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CLDN3O15551 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CLDN3O15551 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
CLDN3O15551 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN3O15551 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CLDN3O15551 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CLDN3O15551 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.87■□□□□ 0.45
CLDN3O15551 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN3O15551 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN3O15551 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.87■□□□□ 0.45
CLDN3O15551 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN3O15551 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN3O15551 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.87■□□□□ 0.45
CLDN3O15551 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN3O15551 FAM220BP-201ENST00000377689 816 ntBASIC17.87■□□□□ 0.45
CLDN3O15551 AL645939.2-201ENST00000427340 991 ntBASIC17.87■□□□□ 0.45
CLDN3O15551 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.87■□□□□ 0.45
CLDN3O15551 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.87■□□□□ 0.45
CLDN3O15551 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.87■□□□□ 0.45
CLDN3O15551 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.87■□□□□ 0.45
CLDN3O15551 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.87■□□□□ 0.45
CLDN3O15551 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN3O15551 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CLDN3O15551 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.87■□□□□ 0.45
CLDN3O15551 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN3O15551 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CLDN3O15551 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CLDN3O15551 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.87■□□□□ 0.45
CLDN3O15551 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN3O15551 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN3O15551 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN3O15551 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.87■□□□□ 0.45
CLDN3O15551 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CLDN3O15551 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN3O15551 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
CLDN3O15551 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.86■□□□□ 0.45
CLDN3O15551 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
CLDN3O15551 AL662844.4-201ENST00000606367 2838 ntBASIC17.86■□□□□ 0.45
CLDN3O15551 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN3O15551 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN3O15551 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CLDN3O15551 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.86■□□□□ 0.45
CLDN3O15551 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.86■□□□□ 0.45
CLDN3O15551 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN3O15551 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CLDN3O15551 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN3O15551 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.86■□□□□ 0.45
CLDN3O15551 SPDYE7P-202ENST00000420373 878 ntBASIC17.86■□□□□ 0.45
CLDN3O15551 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.86■□□□□ 0.45
CLDN3O15551 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.86■□□□□ 0.45
CLDN3O15551 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.86■□□□□ 0.45
CLDN3O15551 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.86■□□□□ 0.45
CLDN3O15551 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN3O15551 AC069262.1-201ENST00000539058 672 ntBASIC17.86■□□□□ 0.45
CLDN3O15551 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.86■□□□□ 0.45
CLDN3O15551 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN3O15551 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.86■□□□□ 0.45
CLDN3O15551 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN3O15551 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN3O15551 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CLDN3O15551 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN3O15551 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.86■□□□□ 0.45
CLDN3O15551 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
CLDN3O15551 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
CLDN3O15551 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
CLDN3O15551 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN3O15551 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN3O15551 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CLDN3O15551 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN3O15551 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN3O15551 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN3O15551 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN3O15551 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN3O15551 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN3O15551 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN3O15551 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.85■□□□□ 0.45
CLDN3O15551 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.85■□□□□ 0.45
CLDN3O15551 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN3O15551 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.85■□□□□ 0.45
CLDN3O15551 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.85■□□□□ 0.45
CLDN3O15551 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.85■□□□□ 0.45
CLDN3O15551 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms