Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.01■□□□□ 0.15
PCDHGA3Q9Y5H0 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA3Q9Y5H0 WASH6P-202ENST00000359512 1437 ntBASIC16.01■□□□□ 0.15
PCDHGA3Q9Y5H0 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA3Q9Y5H0 LINC02199-201ENST00000506655 2702 ntBASIC16.01■□□□□ 0.15
PCDHGA3Q9Y5H0 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA3Q9Y5H0 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PCDHGA3Q9Y5H0 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PCDHGA3Q9Y5H0 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
PCDHGA3Q9Y5H0 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
PCDHGA3Q9Y5H0 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 AL603756.1-201ENST00000606511 2163 ntBASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 MIR943-201ENST00000401286 94 ntBASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 AC026150.2-201ENST00000564693 1156 ntBASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 AC140878.1-201ENST00000565277 250 ntBASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 AC007326.2-201ENST00000624224 7579 ntBASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
PCDHGA3Q9Y5H0 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 AC190387.1-201ENST00000551683 408 ntBASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 AC239800.4-201ENST00000603712 296 ntBASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 TOP3BP1-201ENST00000420768 1380 ntBASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 UXT-AS1-201ENST00000590504 1525 ntBASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 AC005052.1-201ENST00000625181 2492 ntBASIC15.99■□□□□ 0.15
PCDHGA3Q9Y5H0 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDHGA3Q9Y5H0 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms