Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 AL589702.1-201ENST00000641229 1509 ntBASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 AC004461.2-201ENST00000629517 803 ntBASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
SHROOM4Q9ULL8 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 AC061975.2-201ENST00000581722 295 ntBASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
SHROOM4Q9ULL8 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 AC099336.1-201ENST00000417053 1171 ntBASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 MIR8072-201ENST00000614241 80 ntBASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 AC018665.1-201ENST00000622927 1362 ntBASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 AC092171.3-201ENST00000610122 2651 ntBASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SHROOM4Q9ULL8 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 ELK2AP-201ENST00000392510 1007 ntBASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 RNA5SP423-201ENST00000517127 109 ntBASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 DERL2-202ENST00000570848 657 ntTSL 5 BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC30.78■■■□□ 2.52
SHROOM4Q9ULL8 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC30.77■■■□□ 2.52
SHROOM4Q9ULL8 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC30.77■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms