Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
LRFN1Q9P244 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.03■□□□□ -0
LRFN1Q9P244 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
LRFN1Q9P244 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
LRFN1Q9P244 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.03■□□□□ -0
LRFN1Q9P244 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.03■□□□□ -0
LRFN1Q9P244 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.03■□□□□ -0
LRFN1Q9P244 AC093724.1-201ENST00000448659 1027 ntBASIC15.03■□□□□ -0
LRFN1Q9P244 TSPY16P-201ENST00000449843 468 ntBASIC15.03■□□□□ -0
LRFN1Q9P244 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.03■□□□□ -0
LRFN1Q9P244 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LRFN1Q9P244 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
LRFN1Q9P244 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.03■□□□□ -0
LRFN1Q9P244 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.03■□□□□ -0
LRFN1Q9P244 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.03■□□□□ -0
LRFN1Q9P244 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.03■□□□□ -0
LRFN1Q9P244 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LRFN1Q9P244 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
LRFN1Q9P244 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
LRFN1Q9P244 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
LRFN1Q9P244 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
LRFN1Q9P244 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.03■□□□□ -0
LRFN1Q9P244 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.03■□□□□ -0
LRFN1Q9P244 GGT4P-201ENST00000623672 1708 ntBASIC15.03■□□□□ -0
LRFN1Q9P244 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
LRFN1Q9P244 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.03■□□□□ -0
LRFN1Q9P244 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
LRFN1Q9P244 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.03■□□□□ -0
LRFN1Q9P244 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.03■□□□□ -0
LRFN1Q9P244 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.03■□□□□ -0
LRFN1Q9P244 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
LRFN1Q9P244 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.02■□□□□ -0
LRFN1Q9P244 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.02■□□□□ -0
LRFN1Q9P244 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.02■□□□□ -0
LRFN1Q9P244 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.02■□□□□ -0
LRFN1Q9P244 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 MTND6P24-201ENST00000440466 518 ntBASIC15.02■□□□□ -0
LRFN1Q9P244 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.02■□□□□ -0
LRFN1Q9P244 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.02■□□□□ -0
LRFN1Q9P244 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.02■□□□□ -0
LRFN1Q9P244 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.02■□□□□ -0
LRFN1Q9P244 AC024267.1-201ENST00000582320 895 ntBASIC15.02■□□□□ -0
LRFN1Q9P244 AC138761.1-201ENST00000584393 385 ntBASIC15.02■□□□□ -0
LRFN1Q9P244 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
LRFN1Q9P244 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRFN1Q9P244 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.02□□□□□ -0.01
LRFN1Q9P244 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRFN1Q9P244 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRFN1Q9P244 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC15.02□□□□□ -0.01
LRFN1Q9P244 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRFN1Q9P244 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRFN1Q9P244 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
LRFN1Q9P244 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 FLJ16779-201ENST00000612722 7638 ntBASIC15.01□□□□□ -0.01
LRFN1Q9P244 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 SPDYE12P-201ENST00000618416 771 ntBASIC15.01□□□□□ -0.01
LRFN1Q9P244 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.01□□□□□ -0.01
LRFN1Q9P244 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LRFN1Q9P244 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms