Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL20A1Q9P218 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL20A1Q9P218 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL20A1Q9P218 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL20A1Q9P218 AC114501.2-201ENST00000439631 535 ntBASIC18.38■□□□□ 0.53
COL20A1Q9P218 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 API5-211ENST00000534695 560 ntTSL 5 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 AC005225.4-201ENST00000557330 545 ntBASIC18.38■□□□□ 0.53
COL20A1Q9P218 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 AC025048.6-201ENST00000634326 1161 ntBASIC18.38■□□□□ 0.53
COL20A1Q9P218 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 AL109936.8-201ENST00000641772 604 ntBASIC18.38■□□□□ 0.53
COL20A1Q9P218 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL20A1Q9P218 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL20A1Q9P218 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL20A1Q9P218 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL20A1Q9P218 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL20A1Q9P218 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL20A1Q9P218 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL20A1Q9P218 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.38■□□□□ 0.53
COL20A1Q9P218 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
COL20A1Q9P218 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.37■□□□□ 0.53
COL20A1Q9P218 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.37■□□□□ 0.53
COL20A1Q9P218 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
COL20A1Q9P218 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
COL20A1Q9P218 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.37■□□□□ 0.53
COL20A1Q9P218 AL589987.1-201ENST00000453380 819 ntBASIC18.37■□□□□ 0.53
COL20A1Q9P218 SERBP1P3-201ENST00000459980 809 ntBASIC18.37■□□□□ 0.53
COL20A1Q9P218 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.37■□□□□ 0.53
COL20A1Q9P218 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.37■□□□□ 0.53
COL20A1Q9P218 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.37■□□□□ 0.53
COL20A1Q9P218 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.37■□□□□ 0.53
COL20A1Q9P218 AL132655.2-201ENST00000596276 594 ntBASIC18.37■□□□□ 0.53
COL20A1Q9P218 AC004461.2-201ENST00000629517 803 ntBASIC18.37■□□□□ 0.53
COL20A1Q9P218 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.37■□□□□ 0.53
COL20A1Q9P218 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.37■□□□□ 0.53
COL20A1Q9P218 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
COL20A1Q9P218 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.37■□□□□ 0.53
COL20A1Q9P218 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COL20A1Q9P218 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL20A1Q9P218 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL20A1Q9P218 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL20A1Q9P218 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL20A1Q9P218 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL20A1Q9P218 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL20A1Q9P218 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL20A1Q9P218 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL20A1Q9P218 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL20A1Q9P218 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL20A1Q9P218 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL20A1Q9P218 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.36■□□□□ 0.53
COL20A1Q9P218 AL691432.1-201ENST00000596308 1422 ntBASIC18.36■□□□□ 0.53
COL20A1Q9P218 AC239800.4-201ENST00000603712 296 ntBASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms