Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 AL160237.2-201ENST00000556165 472 ntBASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 AL353732.1-201ENST00000569618 1459 ntBASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 AC108073.2-201ENST00000464002 357 ntBASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 AC004790.2-201ENST00000623588 572 ntBASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 AC117500.6-201ENST00000624871 588 ntBASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 PCGF3-213ENST00000620529 1899 ntBASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM56Q9BRZ2 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 AC006449.6-201ENST00000612330 2296 ntBASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 AC009078.2-202ENST00000463353 338 ntBASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 AC105339.3-201ENST00000560043 636 ntBASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 AL603832.2-201ENST00000566195 2125 ntBASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 AC022188.1-201ENST00000620960 1664 ntBASIC16.77■□□□□ 0.28
TRIM56Q9BRZ2 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.77■□□□□ 0.27
TRIM56Q9BRZ2 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM56Q9BRZ2 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms