Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
LINC00477Q96M19 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
LINC00477Q96M19 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC12.33□□□□□ -0.43
LINC00477Q96M19 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
LINC00477Q96M19 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
LINC00477Q96M19 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.43
LINC00477Q96M19 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC12.33□□□□□ -0.43
LINC00477Q96M19 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC12.33□□□□□ -0.43
LINC00477Q96M19 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC12.33□□□□□ -0.43
LINC00477Q96M19 CASK-202ENST00000378158 3848 ntTSL 5 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 HYMAI-201ENST00000635591 3347 ntBASIC12.33□□□□□ -0.44
LINC00477Q96M19 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 FUK-207ENST00000571514 3054 ntTSL 2 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 RPS2P28-201ENST00000314255 741 ntBASIC12.33□□□□□ -0.44
LINC00477Q96M19 DPM2-202ENST00000373110 738 ntTSL 2 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 AC073621.1-201ENST00000392730 636 ntBASIC12.33□□□□□ -0.44
LINC00477Q96M19 MIR1224-201ENST00000408193 85 ntBASIC12.33□□□□□ -0.44
LINC00477Q96M19 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 IGHV3-65-201ENST00000523210 341 ntBASIC12.33□□□□□ -0.44
LINC00477Q96M19 MMP17-203ENST00000535004 719 ntTSL 3 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 TBCB-205ENST00000585746 875 ntTSL 3 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 AC021097.1-201ENST00000607902 574 ntBASIC12.33□□□□□ -0.44
LINC00477Q96M19 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
LINC00477Q96M19 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
LINC00477Q96M19 AL365209.1-201ENST00000624418 6473 ntBASIC12.32□□□□□ -0.44
LINC00477Q96M19 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 AC005622.1-201ENST00000636801 1703 ntBASIC12.32□□□□□ -0.44
LINC00477Q96M19 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 MRPL20P1-201ENST00000400819 433 ntBASIC12.32□□□□□ -0.44
LINC00477Q96M19 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LINC00477Q96M19 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC12.32□□□□□ -0.44
LINC00477Q96M19 ATP6V0CP3-201ENST00000417255 467 ntBASIC12.32□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms