Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 AC023824.1-201ENST00000562945 2975 ntBASIC13.27□□□□□ -0.29
CX3CL1P78423 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
CX3CL1P78423 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 SLC9A3P2-201ENST00000447821 2021 ntBASIC13.27□□□□□ -0.29
CX3CL1P78423 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC13.27□□□□□ -0.29
CX3CL1P78423 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
CX3CL1P78423 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC13.27□□□□□ -0.29
CX3CL1P78423 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC13.27□□□□□ -0.29
CX3CL1P78423 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
CX3CL1P78423 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.26□□□□□ -0.29
CX3CL1P78423 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
CX3CL1P78423 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC13.26□□□□□ -0.29
CX3CL1P78423 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
CX3CL1P78423 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC13.26□□□□□ -0.29
CX3CL1P78423 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.26□□□□□ -0.29
CX3CL1P78423 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.26□□□□□ -0.29
CX3CL1P78423 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC13.26□□□□□ -0.29
CX3CL1P78423 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC13.26□□□□□ -0.29
CX3CL1P78423 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
CX3CL1P78423 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
CX3CL1P78423 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC13.26□□□□□ -0.29
CX3CL1P78423 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
CX3CL1P78423 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 HMGA1P7-201ENST00000406908 502 ntBASIC13.26□□□□□ -0.29
CX3CL1P78423 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
CX3CL1P78423 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC13.26□□□□□ -0.29
CX3CL1P78423 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 KRT18P2-201ENST00000447938 1258 ntBASIC13.26□□□□□ -0.29
CX3CL1P78423 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC13.26□□□□□ -0.29
CX3CL1P78423 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC13.26□□□□□ -0.29
CX3CL1P78423 RNA5SP416-201ENST00000516838 111 ntBASIC13.26□□□□□ -0.29
CX3CL1P78423 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC13.26□□□□□ -0.29
CX3CL1P78423 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 AC018845.2-201ENST00000568326 409 ntBASIC13.26□□□□□ -0.29
CX3CL1P78423 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.26□□□□□ -0.29
CX3CL1P78423 AQP6-205ENST00000618286 829 ntTSL 5 BASIC13.26□□□□□ -0.29
CX3CL1P78423 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC13.26□□□□□ -0.29
CX3CL1P78423 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
CX3CL1P78423 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
CX3CL1P78423 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC13.26□□□□□ -0.29
CX3CL1P78423 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CX3CL1P78423 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
CX3CL1P78423 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC13.25□□□□□ -0.29
CX3CL1P78423 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.25□□□□□ -0.29
CX3CL1P78423 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 AL512652.2-201ENST00000625156 1716 ntBASIC13.25□□□□□ -0.29
CX3CL1P78423 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
CX3CL1P78423 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC13.25□□□□□ -0.29
CX3CL1P78423 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC13.25□□□□□ -0.29
CX3CL1P78423 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CX3CL1P78423 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC13.25□□□□□ -0.29
CX3CL1P78423 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
CX3CL1P78423 AL022342.1-201ENST00000400363 863 ntBASIC13.25□□□□□ -0.29
CX3CL1P78423 MED15P5-201ENST00000423150 992 ntBASIC13.25□□□□□ -0.29
CX3CL1P78423 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC13.25□□□□□ -0.29
CX3CL1P78423 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 KRT18P3-201ENST00000451602 1288 ntBASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms