Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
NEK3P51956 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.93■□□□□ 0.3
NEK3P51956 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
NEK3P51956 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NEK3P51956 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NEK3P51956 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
NEK3P51956 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
NEK3P51956 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
NEK3P51956 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.93■□□□□ 0.3
NEK3P51956 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.93■□□□□ 0.3
NEK3P51956 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NEK3P51956 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.93■□□□□ 0.3
NEK3P51956 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NEK3P51956 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NEK3P51956 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
NEK3P51956 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NEK3P51956 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.93■□□□□ 0.3
NEK3P51956 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NEK3P51956 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.93■□□□□ 0.3
NEK3P51956 AP000344.2-201ENST00000512987 629 ntBASIC16.93■□□□□ 0.3
NEK3P51956 AP001350.2-201ENST00000625104 1094 ntBASIC16.93■□□□□ 0.3
NEK3P51956 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.93■□□□□ 0.3
NEK3P51956 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.93■□□□□ 0.3
NEK3P51956 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NEK3P51956 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NEK3P51956 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.93■□□□□ 0.3
NEK3P51956 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
NEK3P51956 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NEK3P51956 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
NEK3P51956 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NEK3P51956 AC006538.1-201ENST00000567905 1585 ntBASIC16.93■□□□□ 0.3
NEK3P51956 AL136379.1-201ENST00000623471 2642 ntBASIC16.93■□□□□ 0.3
NEK3P51956 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
NEK3P51956 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.93■□□□□ 0.3
NEK3P51956 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
NEK3P51956 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.92■□□□□ 0.3
NEK3P51956 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.92■□□□□ 0.3
NEK3P51956 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.92■□□□□ 0.3
NEK3P51956 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
NEK3P51956 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
NEK3P51956 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.92■□□□□ 0.3
NEK3P51956 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
NEK3P51956 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.92■□□□□ 0.3
NEK3P51956 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.92■□□□□ 0.3
NEK3P51956 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.92■□□□□ 0.3
NEK3P51956 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
NEK3P51956 AC087641.1-201ENST00000557561 1021 ntBASIC16.92■□□□□ 0.3
NEK3P51956 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.92■□□□□ 0.3
NEK3P51956 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.92■□□□□ 0.3
NEK3P51956 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.92■□□□□ 0.3
NEK3P51956 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.92■□□□□ 0.3
NEK3P51956 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.92■□□□□ 0.3
NEK3P51956 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
NEK3P51956 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NEK3P51956 AC005052.1-201ENST00000625181 2492 ntBASIC16.92■□□□□ 0.3
NEK3P51956 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
NEK3P51956 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.92■□□□□ 0.3
NEK3P51956 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
NEK3P51956 PAUPAR-201ENST00000630360 2965 ntBASIC16.92■□□□□ 0.3
NEK3P51956 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.91■□□□□ 0.3
NEK3P51956 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.91■□□□□ 0.3
NEK3P51956 SLC22A20-204ENST00000530038 1673 ntBASIC16.91■□□□□ 0.3
NEK3P51956 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.91■□□□□ 0.3
NEK3P51956 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
NEK3P51956 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NEK3P51956 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
NEK3P51956 AL355306.1-201ENST00000415580 579 ntBASIC16.91■□□□□ 0.3
NEK3P51956 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.91■□□□□ 0.3
NEK3P51956 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.91■□□□□ 0.3
NEK3P51956 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
NEK3P51956 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.91■□□□□ 0.3
NEK3P51956 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.91■□□□□ 0.3
NEK3P51956 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms