Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
PCNAP12004 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
PCNAP12004 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.04■□□□□ 0.16
PCNAP12004 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
PCNAP12004 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.04■□□□□ 0.16
PCNAP12004 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PCNAP12004 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.04■□□□□ 0.16
PCNAP12004 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.04■□□□□ 0.16
PCNAP12004 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.04■□□□□ 0.16
PCNAP12004 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.04■□□□□ 0.16
PCNAP12004 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.04■□□□□ 0.16
PCNAP12004 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.04■□□□□ 0.16
PCNAP12004 Z83851.2-201ENST00000609564 659 ntBASIC16.04■□□□□ 0.16
PCNAP12004 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.04■□□□□ 0.16
PCNAP12004 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.04■□□□□ 0.16
PCNAP12004 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.04■□□□□ 0.16
PCNAP12004 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.04■□□□□ 0.16
PCNAP12004 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.04■□□□□ 0.16
PCNAP12004 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.04■□□□□ 0.16
PCNAP12004 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.04■□□□□ 0.16
PCNAP12004 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.04■□□□□ 0.16
PCNAP12004 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.04■□□□□ 0.16
PCNAP12004 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
PCNAP12004 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
PCNAP12004 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCNAP12004 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.04■□□□□ 0.16
PCNAP12004 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PCNAP12004 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.03■□□□□ 0.16
PCNAP12004 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.03■□□□□ 0.16
PCNAP12004 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.03■□□□□ 0.16
PCNAP12004 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.03■□□□□ 0.16
PCNAP12004 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.03■□□□□ 0.16
PCNAP12004 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.03■□□□□ 0.16
PCNAP12004 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.03■□□□□ 0.16
PCNAP12004 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PCNAP12004 AC024909.3-201ENST00000611513 2257 ntBASIC16.03■□□□□ 0.16
PCNAP12004 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.03■□□□□ 0.16
PCNAP12004 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.03■□□□□ 0.16
PCNAP12004 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.03■□□□□ 0.16
PCNAP12004 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.03■□□□□ 0.16
PCNAP12004 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.03■□□□□ 0.16
PCNAP12004 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCNAP12004 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.02■□□□□ 0.16
PCNAP12004 AC104109.2-201ENST00000602919 1418 ntBASIC16.02■□□□□ 0.16
PCNAP12004 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.02■□□□□ 0.16
PCNAP12004 GGT4P-201ENST00000623672 1708 ntBASIC16.02■□□□□ 0.16
PCNAP12004 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
PCNAP12004 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.02■□□□□ 0.16
PCNAP12004 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCNAP12004 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PCNAP12004 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCNAP12004 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCNAP12004 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCNAP12004 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PCNAP12004 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
PCNAP12004 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PCNAP12004 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCNAP12004 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCNAP12004 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCNAP12004 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCNAP12004 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
PCNAP12004 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.02■□□□□ 0.16
PCNAP12004 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PCNAP12004 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.02■□□□□ 0.16
PCNAP12004 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms