Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.43■□□□□ 0.22
SHOX2O60902 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.43■□□□□ 0.22
SHOX2O60902 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.43■□□□□ 0.22
SHOX2O60902 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
SHOX2O60902 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC16.43■□□□□ 0.22
SHOX2O60902 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
SHOX2O60902 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
SHOX2O60902 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.43■□□□□ 0.22
SHOX2O60902 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC16.43■□□□□ 0.22
SHOX2O60902 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.43■□□□□ 0.22
SHOX2O60902 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
SHOX2O60902 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.43■□□□□ 0.22
SHOX2O60902 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.43■□□□□ 0.22
SHOX2O60902 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.43■□□□□ 0.22
SHOX2O60902 AL512604.3-201ENST00000569583 964 ntBASIC16.43■□□□□ 0.22
SHOX2O60902 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.43■□□□□ 0.22
SHOX2O60902 GPR32P1-201ENST00000601788 811 ntBASIC16.43■□□□□ 0.22
SHOX2O60902 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
SHOX2O60902 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.43■□□□□ 0.22
SHOX2O60902 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC16.43■□□□□ 0.22
SHOX2O60902 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
SHOX2O60902 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 ABR-228ENST00000574437 3196 ntTSL 5 BASIC16.43■□□□□ 0.22
SHOX2O60902 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
SHOX2O60902 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.43■□□□□ 0.22
SHOX2O60902 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
SHOX2O60902 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
SHOX2O60902 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.43■□□□□ 0.22
SHOX2O60902 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHOX2O60902 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.43■□□□□ 0.22
SHOX2O60902 PPP1R26P4-201ENST00000619065 3527 ntBASIC16.42■□□□□ 0.22
SHOX2O60902 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
SHOX2O60902 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC16.42■□□□□ 0.22
SHOX2O60902 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC16.42■□□□□ 0.22
SHOX2O60902 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.42■□□□□ 0.22
SHOX2O60902 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
SHOX2O60902 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.42■□□□□ 0.22
SHOX2O60902 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 TOP3BP1-201ENST00000420768 1380 ntBASIC16.42■□□□□ 0.22
SHOX2O60902 LINC01568-207ENST00000641790 1380 ntBASIC16.42■□□□□ 0.22
SHOX2O60902 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SHOX2O60902 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.42■□□□□ 0.22
SHOX2O60902 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.42■□□□□ 0.22
SHOX2O60902 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SHOX2O60902 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.42■□□□□ 0.22
SHOX2O60902 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 AP000523.1-201ENST00000398242 1049 ntBASIC16.42■□□□□ 0.22
SHOX2O60902 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.42■□□□□ 0.22
SHOX2O60902 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.42■□□□□ 0.22
SHOX2O60902 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.42■□□□□ 0.22
SHOX2O60902 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.42■□□□□ 0.22
SHOX2O60902 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.42■□□□□ 0.22
SHOX2O60902 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 AL023973.1-201ENST00000624619 620 ntBASIC16.42■□□□□ 0.22
SHOX2O60902 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.42■□□□□ 0.22
SHOX2O60902 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.42■□□□□ 0.22
SHOX2O60902 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.42■□□□□ 0.22
SHOX2O60902 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHOX2O60902 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.42■□□□□ 0.22
SHOX2O60902 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC16.41■□□□□ 0.22
SHOX2O60902 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHOX2O60902 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHOX2O60902 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.41■□□□□ 0.22
SHOX2O60902 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHOX2O60902 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHOX2O60902 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms