Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC22.82■■□□□ 1.24
MSH5O43196 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
MSH5O43196 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC22.82■■□□□ 1.24
MSH5O43196 MED29-202ENST00000594368 1471 ntTSL 2 BASIC22.82■■□□□ 1.24
MSH5O43196 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 ARPC3-201ENST00000228825 1014 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 THRB-AS1-201ENST00000432368 1216 ntTSL 2 BASIC22.82■■□□□ 1.24
MSH5O43196 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC22.82■■□□□ 1.24
MSH5O43196 AC136632.2-201ENST00000512891 861 ntBASIC22.82■■□□□ 1.24
MSH5O43196 AC109597.1-201ENST00000564016 786 ntTSL 4 BASIC22.82■■□□□ 1.24
MSH5O43196 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC22.82■■□□□ 1.24
MSH5O43196 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 BNIP3P29-201ENST00000598302 571 ntBASIC22.82■■□□□ 1.24
MSH5O43196 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC22.82■■□□□ 1.24
MSH5O43196 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC22.82■■□□□ 1.24
MSH5O43196 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC22.82■■□□□ 1.24
MSH5O43196 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC22.82■■□□□ 1.24
MSH5O43196 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC22.82■■□□□ 1.24
MSH5O43196 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC22.82■■□□□ 1.24
MSH5O43196 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC22.82■■□□□ 1.24
MSH5O43196 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
MSH5O43196 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 OR5AQ1P-203ENST00000641818 1529 ntBASIC22.82■■□□□ 1.24
MSH5O43196 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC22.82■■□□□ 1.24
MSH5O43196 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 GSTA2-201ENST00000493422 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
MSH5O43196 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH5O43196 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH5O43196 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH5O43196 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC22.81■■□□□ 1.24
MSH5O43196 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH5O43196 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH5O43196 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
MSH5O43196 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH5O43196 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH5O43196 RN7SKP74-201ENST00000362849 309 ntBASIC22.81■■□□□ 1.24
MSH5O43196 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC22.81■■□□□ 1.24
MSH5O43196 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC22.81■■□□□ 1.24
MSH5O43196 SPCS1-202ENST00000423431 822 ntTSL 3 BASIC22.81■■□□□ 1.24
MSH5O43196 FAM204CP-201ENST00000424489 642 ntBASIC22.81■■□□□ 1.24
MSH5O43196 MTATP6P11-201ENST00000428071 670 ntBASIC22.81■■□□□ 1.24
MSH5O43196 WBP2-203ENST00000433525 928 ntTSL 2 BASIC22.81■■□□□ 1.24
MSH5O43196 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC22.81■■□□□ 1.24
MSH5O43196 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC22.81■■□□□ 1.24
MSH5O43196 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC22.81■■□□□ 1.24
MSH5O43196 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
MSH5O43196 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC22.81■■□□□ 1.24
MSH5O43196 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC22.81■■□□□ 1.24
MSH5O43196 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
MSH5O43196 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC22.81■■□□□ 1.24
MSH5O43196 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC22.81■■□□□ 1.24
MSH5O43196 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC22.81■■□□□ 1.24
MSH5O43196 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC22.81■■□□□ 1.24
MSH5O43196 BNIP3P30-201ENST00000601184 574 ntBASIC22.81■■□□□ 1.24
MSH5O43196 AC080013.6-201ENST00000606185 215 ntBASIC22.81■■□□□ 1.24
MSH5O43196 AC013562.2-201ENST00000611632 603 ntBASIC22.81■■□□□ 1.24
MSH5O43196 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC22.81■■□□□ 1.24
MSH5O43196 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH5O43196 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH5O43196 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
MSH5O43196 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
MSH5O43196 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
MSH5O43196 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC22.81■■□□□ 1.24
MSH5O43196 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
MSH5O43196 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC22.81■■□□□ 1.24
MSH5O43196 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
MSH5O43196 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC22.8■■□□□ 1.24
MSH5O43196 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
MSH5O43196 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC22.8■■□□□ 1.24
MSH5O43196 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC22.8■■□□□ 1.24
MSH5O43196 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
MSH5O43196 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC22.8■■□□□ 1.24
MSH5O43196 KRT18P27-201ENST00000427733 1299 ntBASIC22.8■■□□□ 1.24
MSH5O43196 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC22.8■■□□□ 1.24
MSH5O43196 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
MSH5O43196 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
MSH5O43196 AC060788.1-201ENST00000521318 469 ntBASIC22.8■■□□□ 1.24
MSH5O43196 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC22.8■■□□□ 1.24
MSH5O43196 AC139099.1-204ENST00000575205 425 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
MSH5O43196 AL356055.1-201ENST00000602528 446 ntBASIC22.8■■□□□ 1.24
MSH5O43196 AC105129.3-201ENST00000605455 485 ntBASIC22.8■■□□□ 1.24
MSH5O43196 AC017083.3-201ENST00000609955 700 ntBASIC22.8■■□□□ 1.24
MSH5O43196 SATB1-AS1-242ENST00000627496 807 ntTSL 5 BASIC22.8■■□□□ 1.24
MSH5O43196 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
MSH5O43196 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
MSH5O43196 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC22.8■■□□□ 1.24
MSH5O43196 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.24
MSH5O43196 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC22.8■■□□□ 1.24
MSH5O43196 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
MSH5O43196 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
MSH5O43196 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms