Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
FOXN3O00409 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXN3O00409 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXN3O00409 LINC02447-202ENST00000501888 2146 ntBASIC17.54■□□□□ 0.4
FOXN3O00409 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXN3O00409 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXN3O00409 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.54■□□□□ 0.4
FOXN3O00409 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
FOXN3O00409 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXN3O00409 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.54■□□□□ 0.4
FOXN3O00409 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXN3O00409 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
FOXN3O00409 AC002056.1-201ENST00000395613 760 ntBASIC17.54■□□□□ 0.4
FOXN3O00409 AC023274.1-201ENST00000418278 595 ntBASIC17.54■□□□□ 0.4
FOXN3O00409 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.54■□□□□ 0.4
FOXN3O00409 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.54■□□□□ 0.4
FOXN3O00409 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.54■□□□□ 0.4
FOXN3O00409 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.54■□□□□ 0.4
FOXN3O00409 AC099522.2-201ENST00000607001 744 ntBASIC17.54■□□□□ 0.4
FOXN3O00409 AL161645.1-201ENST00000622716 1255 ntBASIC17.54■□□□□ 0.4
FOXN3O00409 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXN3O00409 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXN3O00409 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXN3O00409 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
FOXN3O00409 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
FOXN3O00409 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.54■□□□□ 0.4
FOXN3O00409 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
FOXN3O00409 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXN3O00409 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
FOXN3O00409 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.54■□□□□ 0.4
FOXN3O00409 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXN3O00409 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.54■□□□□ 0.4
FOXN3O00409 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
FOXN3O00409 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.54■□□□□ 0.4
FOXN3O00409 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXN3O00409 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
FOXN3O00409 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.53■□□□□ 0.4
FOXN3O00409 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXN3O00409 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXN3O00409 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
FOXN3O00409 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXN3O00409 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXN3O00409 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
FOXN3O00409 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXN3O00409 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXN3O00409 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXN3O00409 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXN3O00409 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXN3O00409 MIR940-201ENST00000401276 94 ntBASIC17.53■□□□□ 0.4
FOXN3O00409 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
FOXN3O00409 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.53■□□□□ 0.4
FOXN3O00409 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
FOXN3O00409 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.53■□□□□ 0.4
FOXN3O00409 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.53■□□□□ 0.4
FOXN3O00409 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXN3O00409 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.53■□□□□ 0.4
FOXN3O00409 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXN3O00409 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXN3O00409 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.53■□□□□ 0.4
FOXN3O00409 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXN3O00409 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.53■□□□□ 0.4
FOXN3O00409 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
FOXN3O00409 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
FOXN3O00409 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
FOXN3O00409 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
FOXN3O00409 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.53■□□□□ 0.4
FOXN3O00409 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.53■□□□□ 0.4
FOXN3O00409 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
FOXN3O00409 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.52■□□□□ 0.4
FOXN3O00409 AC069224.1-201ENST00000566372 1715 ntBASIC17.52■□□□□ 0.4
FOXN3O00409 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXN3O00409 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXN3O00409 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
FOXN3O00409 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXN3O00409 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.52■□□□□ 0.4
FOXN3O00409 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
FOXN3O00409 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXN3O00409 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXN3O00409 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXN3O00409 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
FOXN3O00409 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXN3O00409 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
FOXN3O00409 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.52■□□□□ 0.4
FOXN3O00409 MIR648-201ENST00000385046 94 ntBASIC17.52■□□□□ 0.4
FOXN3O00409 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXN3O00409 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.52■□□□□ 0.4
FOXN3O00409 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.52■□□□□ 0.4
FOXN3O00409 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.52■□□□□ 0.4
FOXN3O00409 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.52■□□□□ 0.4
FOXN3O00409 AL138918.1-201ENST00000568306 659 ntBASIC17.52■□□□□ 0.4
FOXN3O00409 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
FOXN3O00409 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms