Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
UPK1AO00322 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
UPK1AO00322 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
UPK1AO00322 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
UPK1AO00322 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.57■□□□□ 0.08
UPK1AO00322 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
UPK1AO00322 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.57■□□□□ 0.08
UPK1AO00322 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
UPK1AO00322 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.57■□□□□ 0.08
UPK1AO00322 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
UPK1AO00322 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.57■□□□□ 0.08
UPK1AO00322 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.57■□□□□ 0.08
UPK1AO00322 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.57■□□□□ 0.08
UPK1AO00322 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
UPK1AO00322 GPAA1P2-202ENST00000606848 1787 ntBASIC15.57■□□□□ 0.08
UPK1AO00322 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
UPK1AO00322 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.57■□□□□ 0.08
UPK1AO00322 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
UPK1AO00322 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
UPK1AO00322 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
UPK1AO00322 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
UPK1AO00322 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.56■□□□□ 0.08
UPK1AO00322 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
UPK1AO00322 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
UPK1AO00322 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.56■□□□□ 0.08
UPK1AO00322 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.56■□□□□ 0.08
UPK1AO00322 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
UPK1AO00322 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
UPK1AO00322 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
UPK1AO00322 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
UPK1AO00322 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
UPK1AO00322 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
UPK1AO00322 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.56■□□□□ 0.08
UPK1AO00322 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
UPK1AO00322 RHOQP3-201ENST00000437982 621 ntBASIC15.56■□□□□ 0.08
UPK1AO00322 AL031432.2-201ENST00000566714 459 ntBASIC15.56■□□□□ 0.08
UPK1AO00322 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.56■□□□□ 0.08
UPK1AO00322 AL928711.1-201ENST00000570165 459 ntBASIC15.56■□□□□ 0.08
UPK1AO00322 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.56■□□□□ 0.08
UPK1AO00322 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.56■□□□□ 0.08
UPK1AO00322 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
UPK1AO00322 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.56■□□□□ 0.08
UPK1AO00322 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.56■□□□□ 0.08
UPK1AO00322 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
UPK1AO00322 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
UPK1AO00322 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
UPK1AO00322 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.56■□□□□ 0.08
UPK1AO00322 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
UPK1AO00322 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
UPK1AO00322 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
UPK1AO00322 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
UPK1AO00322 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.56■□□□□ 0.08
UPK1AO00322 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
UPK1AO00322 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
UPK1AO00322 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.56■□□□□ 0.08
UPK1AO00322 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
UPK1AO00322 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
UPK1AO00322 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.56■□□□□ 0.08
UPK1AO00322 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
UPK1AO00322 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.55■□□□□ 0.08
UPK1AO00322 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.55■□□□□ 0.08
UPK1AO00322 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.55■□□□□ 0.08
UPK1AO00322 CDC14C-201ENST00000428251 1719 ntBASIC15.55■□□□□ 0.08
UPK1AO00322 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 AC099063.4-201ENST00000641099 1602 ntBASIC15.55■□□□□ 0.08
UPK1AO00322 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.55■□□□□ 0.08
UPK1AO00322 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
UPK1AO00322 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.55■□□□□ 0.08
UPK1AO00322 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.55■□□□□ 0.08
UPK1AO00322 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.55■□□□□ 0.08
UPK1AO00322 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
UPK1AO00322 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
UPK1AO00322 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
UPK1AO00322 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.55■□□□□ 0.08
UPK1AO00322 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15.55■□□□□ 0.08
UPK1AO00322 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.55■□□□□ 0.08
UPK1AO00322 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.55■□□□□ 0.08
UPK1AO00322 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
UPK1AO00322 AC064836.3-201ENST00000607928 673 ntBASIC15.55■□□□□ 0.08
UPK1AO00322 BX640515.1-201ENST00000617215 977 ntBASIC15.55■□□□□ 0.08
UPK1AO00322 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 PPT1-215ENST00000641471 2368 ntBASIC15.55■□□□□ 0.08
UPK1AO00322 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.55■□□□□ 0.08
UPK1AO00322 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
UPK1AO00322 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
UPK1AO00322 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms