Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 AC025062.2-201ENST00000605477 670 ntBASIC17.76■□□□□ 0.43
CCDC42Q96M95 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 DBET-201ENST00000630918 3363 ntBASIC17.76■□□□□ 0.43
CCDC42Q96M95 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC42Q96M95 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC42Q96M95 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CCDC42Q96M95 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC42Q96M95 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CCDC42Q96M95 LAGE3P1-201ENST00000425356 484 ntBASIC17.75■□□□□ 0.43
CCDC42Q96M95 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.75■□□□□ 0.43
CCDC42Q96M95 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.75■□□□□ 0.43
CCDC42Q96M95 MIR3652-201ENST00000579335 131 ntBASIC17.75■□□□□ 0.43
CCDC42Q96M95 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.75■□□□□ 0.43
CCDC42Q96M95 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC42Q96M95 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.75■□□□□ 0.43
CCDC42Q96M95 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.75■□□□□ 0.43
CCDC42Q96M95 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC42Q96M95 AC069224.1-201ENST00000566372 1715 ntBASIC17.75■□□□□ 0.43
CCDC42Q96M95 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CCDC42Q96M95 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CCDC42Q96M95 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CCDC42Q96M95 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 AC144831.1-201ENST00000573312 2656 ntBASIC17.74■□□□□ 0.43
CCDC42Q96M95 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 MIR648-201ENST00000385046 94 ntBASIC17.74■□□□□ 0.43
CCDC42Q96M95 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 RPS15P9-201ENST00000494093 319 ntBASIC17.74■□□□□ 0.43
CCDC42Q96M95 KRT18P35-201ENST00000510488 1269 ntBASIC17.74■□□□□ 0.43
CCDC42Q96M95 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 AC005622.1-201ENST00000636801 1703 ntBASIC17.74■□□□□ 0.43
CCDC42Q96M95 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC42Q96M95 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC42Q96M95 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms