Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
LMX1AQ8TE12 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1AQ8TE12 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1AQ8TE12 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1AQ8TE12 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1AQ8TE12 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.93■□□□□ 0.14
LMX1AQ8TE12 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1AQ8TE12 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1AQ8TE12 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1AQ8TE12 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1AQ8TE12 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC15.93■□□□□ 0.14
LMX1AQ8TE12 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1AQ8TE12 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 SERBP1P3-201ENST00000459980 809 ntBASIC15.92■□□□□ 0.14
LMX1AQ8TE12 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 PUDP-206ENST00000540122 825 ntTSL 2 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 AL596325.1-201ENST00000563991 1082 ntBASIC15.92■□□□□ 0.14
LMX1AQ8TE12 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 PCDHB18P-201ENST00000524813 2368 ntBASIC15.92■□□□□ 0.14
LMX1AQ8TE12 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
LMX1AQ8TE12 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.91■□□□□ 0.14
LMX1AQ8TE12 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 GNAQP1-201ENST00000444815 1067 ntBASIC15.91■□□□□ 0.14
LMX1AQ8TE12 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 AL512361.1-201ENST00000554200 418 ntBASIC15.91■□□□□ 0.14
LMX1AQ8TE12 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 AC104794.3-201ENST00000566840 1248 ntBASIC15.91■□□□□ 0.14
LMX1AQ8TE12 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.91■□□□□ 0.14
LMX1AQ8TE12 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 AC005622.1-201ENST00000636801 1703 ntBASIC15.91■□□□□ 0.14
LMX1AQ8TE12 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LMX1AQ8TE12 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 AP001094.4-201ENST00000579008 2176 ntBASIC15.9■□□□□ 0.14
LMX1AQ8TE12 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms