Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.83■□□□□ 0.12
CLHC1Q8NHS4 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 HCG4-201ENST00000418983 998 ntBASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 AC079781.3-201ENST00000449110 356 ntBASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 AF186996.4-201ENST00000467186 377 ntBASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 OR7E47P-204ENST00000575924 449 ntBASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 AC005593.1-201ENST00000624894 515 ntBASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 PRAL-201ENST00000624952 3286 ntBASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLHC1Q8NHS4 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 MRPL20P1-201ENST00000400819 433 ntBASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 KRT18P67-201ENST00000432816 1264 ntBASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 AP003680.1-201ENST00000598970 3660 ntBASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 AC117500.6-201ENST00000624871 588 ntBASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 LINC01144-201ENST00000626198 1710 ntBASIC15.81■□□□□ 0.12
CLHC1Q8NHS4 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms