Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 AC091812.2-201ENST00000619081 385 ntBASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 PMS2P7-201ENST00000506558 1336 ntBASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC65Q8IXS2 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 MCCD1P2-201ENST00000423228 335 ntBASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 FAM58CP-201ENST00000435741 640 ntBASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 RARRES2P8-201ENST00000566335 367 ntBASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC65Q8IXS2 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 AC004832.2-201ENST00000426397 482 ntBASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 AL671883.3-201ENST00000603274 991 ntBASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms