Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 BAALC-201ENST00000297574 801 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 PEX7-202ENST00000367756 680 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 AC011298.2-201ENST00000617989 482 ntBASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 FSCN1P1-201ENST00000568912 1481 ntBASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 AC036111.1-201ENST00000533973 1582 ntBASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28AQ8IWP9 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 PRORSD1P-201ENST00000295112 541 ntBASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 FAM207BP-201ENST00000447172 505 ntBASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28AQ8IWP9 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC13.77□□□□□ -0.2
CCDC28AQ8IWP9 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.77□□□□□ -0.2
CCDC28AQ8IWP9 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC28AQ8IWP9 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC13.77□□□□□ -0.2
CCDC28AQ8IWP9 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC28AQ8IWP9 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC28AQ8IWP9 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC28AQ8IWP9 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CCDC28AQ8IWP9 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CCDC28AQ8IWP9 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms