Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ZNF549Q6P9A3 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 AL592424.1-201ENST00000563624 1536 ntBASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 AC026396.1-201ENST00000419388 421 ntBASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 AC106730.1-201ENST00000566722 1090 ntBASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 AC120114.3-201ENST00000611923 658 ntBASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 AC092865.6-201ENST00000642101 219 ntBASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 AC010491.1-201ENST00000563101 2797 ntBASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 CICP6-201ENST00000457191 2729 ntBASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ZNF549Q6P9A3 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.29■□□□□ 0.2
ZNF549Q6P9A3 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 ZNF259P1-201ENST00000407656 1365 ntBASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 AC016027.1-202ENST00000607927 1699 ntBASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.28■□□□□ 0.2
ZNF549Q6P9A3 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms