Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A4P53420 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.27■□□□□ 0.36
COL4A4P53420 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A4P53420 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A4P53420 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A4P53420 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.27■□□□□ 0.36
COL4A4P53420 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.27■□□□□ 0.36
COL4A4P53420 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A4P53420 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL4A4P53420 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.27■□□□□ 0.36
COL4A4P53420 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.27■□□□□ 0.36
COL4A4P53420 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
COL4A4P53420 LINC01115-203ENST00000606068 577 ntBASIC17.27■□□□□ 0.36
COL4A4P53420 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A4P53420 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC17.27■□□□□ 0.36
COL4A4P53420 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.27■□□□□ 0.36
COL4A4P53420 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A4P53420 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL4A4P53420 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL4A4P53420 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL4A4P53420 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL4A4P53420 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
COL4A4P53420 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
COL4A4P53420 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.27■□□□□ 0.35
COL4A4P53420 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL4A4P53420 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.27■□□□□ 0.35
COL4A4P53420 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
COL4A4P53420 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 KLF2P4-201ENST00000451959 1225 ntBASIC17.26■□□□□ 0.35
COL4A4P53420 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A4P53420 EMC4-209ENST00000559421 497 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A4P53420 ARL16-210ENST00000574938 751 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A4P53420 AC026979.3-201ENST00000607315 403 ntBASIC17.26■□□□□ 0.35
COL4A4P53420 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL4A4P53420 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
COL4A4P53420 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
COL4A4P53420 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 AC093525.8-201ENST00000624099 1342 ntBASIC17.26■□□□□ 0.35
COL4A4P53420 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.26■□□□□ 0.35
COL4A4P53420 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.26■□□□□ 0.35
COL4A4P53420 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.26■□□□□ 0.35
COL4A4P53420 RNA5SP412-201ENST00000516234 123 ntBASIC17.26■□□□□ 0.35
COL4A4P53420 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A4P53420 RHOQP1-201ENST00000555758 579 ntBASIC17.26■□□□□ 0.35
COL4A4P53420 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.26■□□□□ 0.35
COL4A4P53420 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.26■□□□□ 0.35
COL4A4P53420 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.26■□□□□ 0.35
COL4A4P53420 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC17.26■□□□□ 0.35
COL4A4P53420 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.26■□□□□ 0.35
COL4A4P53420 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A4P53420 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A4P53420 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A4P53420 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A4P53420 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
COL4A4P53420 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.25■□□□□ 0.35
COL4A4P53420 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.25■□□□□ 0.35
COL4A4P53420 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A4P53420 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.25■□□□□ 0.35
COL4A4P53420 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A4P53420 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A4P53420 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A4P53420 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.25■□□□□ 0.35
COL4A4P53420 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
COL4A4P53420 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A4P53420 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.25■□□□□ 0.35
COL4A4P53420 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A4P53420 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.25■□□□□ 0.35
COL4A4P53420 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC17.25■□□□□ 0.35
COL4A4P53420 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC17.25■□□□□ 0.35
COL4A4P53420 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.25■□□□□ 0.35
COL4A4P53420 AC068587.3-201ENST00000526613 355 ntBASIC17.25■□□□□ 0.35
COL4A4P53420 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC17.25■□□□□ 0.35
COL4A4P53420 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC17.25■□□□□ 0.35
COL4A4P53420 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.25■□□□□ 0.35
COL4A4P53420 MIR6069-201ENST00000620069 79 ntBASIC17.25■□□□□ 0.35
COL4A4P53420 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A4P53420 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A4P53420 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A4P53420 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
COL4A4P53420 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A4P53420 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A4P53420 AC009053.2-201ENST00000563701 2365 ntBASIC17.24■□□□□ 0.35
COL4A4P53420 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A4P53420 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A4P53420 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
COL4A4P53420 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A4P53420 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A4P53420 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms