Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.96■□□□□ 0.31
NEK3P51956 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NEK3P51956 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NEK3P51956 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
NEK3P51956 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
NEK3P51956 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.96■□□□□ 0.3
NEK3P51956 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.96■□□□□ 0.3
NEK3P51956 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
NEK3P51956 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
NEK3P51956 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.96■□□□□ 0.3
NEK3P51956 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.96■□□□□ 0.3
NEK3P51956 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.96■□□□□ 0.3
NEK3P51956 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
NEK3P51956 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
NEK3P51956 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
NEK3P51956 AC023824.1-201ENST00000562945 2975 ntBASIC16.95■□□□□ 0.3
NEK3P51956 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
NEK3P51956 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
NEK3P51956 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.95■□□□□ 0.3
NEK3P51956 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.95■□□□□ 0.3
NEK3P51956 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 HMGA1P7-201ENST00000406908 502 ntBASIC16.95■□□□□ 0.3
NEK3P51956 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.95■□□□□ 0.3
NEK3P51956 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.95■□□□□ 0.3
NEK3P51956 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.95■□□□□ 0.3
NEK3P51956 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.95■□□□□ 0.3
NEK3P51956 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.95■□□□□ 0.3
NEK3P51956 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.95■□□□□ 0.3
NEK3P51956 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
NEK3P51956 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.95■□□□□ 0.3
NEK3P51956 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.95■□□□□ 0.3
NEK3P51956 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.95■□□□□ 0.3
NEK3P51956 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.95■□□□□ 0.3
NEK3P51956 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.95■□□□□ 0.3
NEK3P51956 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.95■□□□□ 0.3
NEK3P51956 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
NEK3P51956 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
NEK3P51956 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 KRT8P49-201ENST00000604166 1432 ntBASIC16.95■□□□□ 0.3
NEK3P51956 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.95■□□□□ 0.3
NEK3P51956 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NEK3P51956 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
NEK3P51956 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
NEK3P51956 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
NEK3P51956 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
NEK3P51956 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 CNN2P11-201ENST00000429351 262 ntBASIC16.94■□□□□ 0.3
NEK3P51956 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 HLA-J-202ENST00000469281 1241 ntBASIC16.94■□□□□ 0.3
NEK3P51956 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
NEK3P51956 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
NEK3P51956 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.94■□□□□ 0.3
NEK3P51956 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
NEK3P51956 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
NEK3P51956 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
NEK3P51956 LINC00895-201ENST00000629028 1637 ntBASIC16.94■□□□□ 0.3
NEK3P51956 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
NEK3P51956 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.94■□□□□ 0.3
NEK3P51956 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.94■□□□□ 0.3
NEK3P51956 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
NEK3P51956 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NEK3P51956 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.94■□□□□ 0.3
NEK3P51956 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NEK3P51956 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NEK3P51956 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.93■□□□□ 0.3
NEK3P51956 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.93■□□□□ 0.3
NEK3P51956 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.93■□□□□ 0.3
NEK3P51956 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.93■□□□□ 0.3
NEK3P51956 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms