Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
RFX3P48380 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 AC012569.1-201ENST00000591191 1524 ntBASIC15.51■□□□□ 0.07
RFX3P48380 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
RFX3P48380 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.51■□□□□ 0.07
RFX3P48380 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.51■□□□□ 0.07
RFX3P48380 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
RFX3P48380 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RFX3P48380 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.51■□□□□ 0.07
RFX3P48380 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.51■□□□□ 0.07
RFX3P48380 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFX3P48380 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFX3P48380 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFX3P48380 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.5■□□□□ 0.07
RFX3P48380 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
RFX3P48380 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFX3P48380 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFX3P48380 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFX3P48380 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.5■□□□□ 0.07
RFX3P48380 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.5■□□□□ 0.07
RFX3P48380 AC006538.1-201ENST00000567905 1585 ntBASIC15.5■□□□□ 0.07
RFX3P48380 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
RFX3P48380 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RFX3P48380 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
RFX3P48380 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.5■□□□□ 0.07
RFX3P48380 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFX3P48380 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RFX3P48380 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RFX3P48380 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
RFX3P48380 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.5■□□□□ 0.07
RFX3P48380 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.5■□□□□ 0.07
RFX3P48380 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.5■□□□□ 0.07
RFX3P48380 AC034105.1-201ENST00000563488 319 ntBASIC15.5■□□□□ 0.07
RFX3P48380 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.5■□□□□ 0.07
RFX3P48380 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.5■□□□□ 0.07
RFX3P48380 AC013467.2-201ENST00000605472 835 ntBASIC15.5■□□□□ 0.07
RFX3P48380 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.5■□□□□ 0.07
RFX3P48380 AC010507.1-201ENST00000633895 436 ntBASIC15.5■□□□□ 0.07
RFX3P48380 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.5■□□□□ 0.07
RFX3P48380 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFX3P48380 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
RFX3P48380 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
RFX3P48380 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RFX3P48380 PCDHA1-201ENST00000378133 2726 ntBASIC15.5■□□□□ 0.07
RFX3P48380 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.5■□□□□ 0.07
RFX3P48380 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RFX3P48380 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.5■□□□□ 0.07
RFX3P48380 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.49■□□□□ 0.07
RFX3P48380 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.49■□□□□ 0.07
RFX3P48380 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 IGLL3P-201ENST00000412472 434 ntBASIC15.49■□□□□ 0.07
RFX3P48380 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.49■□□□□ 0.07
RFX3P48380 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.49■□□□□ 0.07
RFX3P48380 FAM185BP-201ENST00000443595 716 ntBASIC15.49■□□□□ 0.07
RFX3P48380 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
RFX3P48380 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.49■□□□□ 0.07
RFX3P48380 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.49■□□□□ 0.07
RFX3P48380 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
RFX3P48380 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.49■□□□□ 0.07
RFX3P48380 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 BX640515.1-201ENST00000617215 977 ntBASIC15.49■□□□□ 0.07
RFX3P48380 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
RFX3P48380 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
RFX3P48380 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
RFX3P48380 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.49■□□□□ 0.07
RFX3P48380 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.49■□□□□ 0.07
RFX3P48380 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
RFX3P48380 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RFX3P48380 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.48■□□□□ 0.07
RFX3P48380 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
RFX3P48380 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.48■□□□□ 0.07
RFX3P48380 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.48■□□□□ 0.07
RFX3P48380 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.48■□□□□ 0.07
RFX3P48380 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms