Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX2-1P43699 KRT8P39-201ENST00000396270 1433 ntBASIC13.51□□□□□ -0.25
NKX2-1P43699 TOP3BP1-201ENST00000420768 1380 ntBASIC13.51□□□□□ -0.25
NKX2-1P43699 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX2-1P43699 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
NKX2-1P43699 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC13.51□□□□□ -0.25
NKX2-1P43699 AC092647.4-201ENST00000457211 535 ntBASIC13.51□□□□□ -0.25
NKX2-1P43699 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 LINC01238-205ENST00000567549 1107 ntBASIC13.51□□□□□ -0.25
NKX2-1P43699 TERC-201ENST00000602385 541 ntBASIC13.51□□□□□ -0.25
NKX2-1P43699 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX2-1P43699 HYMAI.1-201ENST00000620949 238 ntBASIC13.51□□□□□ -0.25
NKX2-1P43699 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX2-1P43699 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC13.51□□□□□ -0.25
NKX2-1P43699 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX2-1P43699 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
NKX2-1P43699 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX2-1P43699 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX2-1P43699 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX2-1P43699 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
NKX2-1P43699 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 PMPCAP1-201ENST00000508114 1576 ntBASIC13.5□□□□□ -0.25
NKX2-1P43699 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
NKX2-1P43699 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
NKX2-1P43699 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX2-1P43699 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC13.5□□□□□ -0.25
NKX2-1P43699 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
NKX2-1P43699 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 LINC00982-205ENST00000420957 435 ntBASIC13.5□□□□□ -0.25
NKX2-1P43699 S100A2-206ENST00000497140 697 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX2-1P43699 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX2-1P43699 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC13.5□□□□□ -0.25
NKX2-1P43699 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX2-1P43699 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC13.5□□□□□ -0.25
NKX2-1P43699 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC13.5□□□□□ -0.25
NKX2-1P43699 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC13.5□□□□□ -0.25
NKX2-1P43699 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX2-1P43699 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC13.5□□□□□ -0.25
NKX2-1P43699 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
NKX2-1P43699 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
NKX2-1P43699 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.5□□□□□ -0.25
NKX2-1P43699 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 AC069224.1-201ENST00000566372 1715 ntBASIC13.5□□□□□ -0.25
NKX2-1P43699 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX2-1P43699 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-1P43699 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
NKX2-1P43699 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
NKX2-1P43699 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
NKX2-1P43699 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-1P43699 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC13.49□□□□□ -0.25
NKX2-1P43699 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13.49□□□□□ -0.25
NKX2-1P43699 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-1P43699 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-1P43699 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.49□□□□□ -0.25
NKX2-1P43699 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-1P43699 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
NKX2-1P43699 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC13.49□□□□□ -0.25
NKX2-1P43699 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-1P43699 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC13.49□□□□□ -0.25
NKX2-1P43699 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC13.49□□□□□ -0.25
NKX2-1P43699 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-1P43699 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-1P43699 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-1P43699 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
NKX2-1P43699 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
NKX2-1P43699 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-1P43699 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC13.49□□□□□ -0.25
NKX2-1P43699 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms