Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.97■□□□□ 0.15
HNF4AP41235 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.97■□□□□ 0.15
HNF4AP41235 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.97■□□□□ 0.15
HNF4AP41235 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.97■□□□□ 0.15
HNF4AP41235 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.97■□□□□ 0.15
HNF4AP41235 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.97■□□□□ 0.15
HNF4AP41235 KRT19P2-202ENST00000557173 1012 ntBASIC15.97■□□□□ 0.15
HNF4AP41235 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.97■□□□□ 0.15
HNF4AP41235 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.97■□□□□ 0.15
HNF4AP41235 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC15.97■□□□□ 0.15
HNF4AP41235 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.97■□□□□ 0.15
HNF4AP41235 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 PCDHA1-201ENST00000378133 2726 ntBASIC15.97■□□□□ 0.15
HNF4AP41235 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.97■□□□□ 0.15
HNF4AP41235 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
HNF4AP41235 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.97■□□□□ 0.15
HNF4AP41235 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.97■□□□□ 0.15
HNF4AP41235 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.97■□□□□ 0.15
HNF4AP41235 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.97■□□□□ 0.15
HNF4AP41235 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.97■□□□□ 0.15
HNF4AP41235 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
HNF4AP41235 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
HNF4AP41235 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.97■□□□□ 0.15
HNF4AP41235 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.97■□□□□ 0.15
HNF4AP41235 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
HNF4AP41235 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HNF4AP41235 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.96■□□□□ 0.15
HNF4AP41235 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
HNF4AP41235 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.96■□□□□ 0.15
HNF4AP41235 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
HNF4AP41235 AC103702.1-201ENST00000548801 2630 ntBASIC15.96■□□□□ 0.15
HNF4AP41235 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.96■□□□□ 0.15
HNF4AP41235 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
HNF4AP41235 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
HNF4AP41235 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.96■□□□□ 0.15
HNF4AP41235 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.96■□□□□ 0.15
HNF4AP41235 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.96■□□□□ 0.15
HNF4AP41235 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.96■□□□□ 0.15
HNF4AP41235 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.96■□□□□ 0.15
HNF4AP41235 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.96■□□□□ 0.15
HNF4AP41235 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.96■□□□□ 0.15
HNF4AP41235 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.96■□□□□ 0.15
HNF4AP41235 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.96■□□□□ 0.15
HNF4AP41235 AL671883.3-201ENST00000603274 991 ntBASIC15.96■□□□□ 0.15
HNF4AP41235 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.96■□□□□ 0.15
HNF4AP41235 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.96■□□□□ 0.15
HNF4AP41235 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HNF4AP41235 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
HNF4AP41235 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
HNF4AP41235 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
HNF4AP41235 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.96■□□□□ 0.14
HNF4AP41235 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HNF4AP41235 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HNF4AP41235 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
HNF4AP41235 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
HNF4AP41235 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.95■□□□□ 0.14
HNF4AP41235 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.95■□□□□ 0.14
HNF4AP41235 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.95■□□□□ 0.14
HNF4AP41235 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
HNF4AP41235 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.95■□□□□ 0.14
HNF4AP41235 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HNF4AP41235 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
HNF4AP41235 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms