Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.89■□□□□ 0.29
HMGA1P17096 AC004461.2-201ENST00000629517 803 ntBASIC16.89■□□□□ 0.29
HMGA1P17096 AL109936.8-201ENST00000641772 604 ntBASIC16.89■□□□□ 0.29
HMGA1P17096 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGA1P17096 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.89■□□□□ 0.29
HMGA1P17096 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HMGA1P17096 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.89■□□□□ 0.29
HMGA1P17096 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
HMGA1P17096 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.88■□□□□ 0.29
HMGA1P17096 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGA1P17096 ME2P1-201ENST00000426028 1970 ntBASIC16.88■□□□□ 0.29
HMGA1P17096 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HMGA1P17096 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HMGA1P17096 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HMGA1P17096 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGA1P17096 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.88■□□□□ 0.29
HMGA1P17096 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.88■□□□□ 0.29
HMGA1P17096 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.88■□□□□ 0.29
HMGA1P17096 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGA1P17096 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGA1P17096 DOC2GP-202ENST00000514950 1163 ntBASIC16.88■□□□□ 0.29
HMGA1P17096 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.88■□□□□ 0.29
HMGA1P17096 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.88■□□□□ 0.29
HMGA1P17096 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.88■□□□□ 0.29
HMGA1P17096 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 REXO1L8P-201ENST00000604378 1897 ntBASIC16.88■□□□□ 0.29
HMGA1P17096 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HMGA1P17096 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HMGA1P17096 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
HMGA1P17096 AL691432.1-201ENST00000596308 1422 ntBASIC16.87■□□□□ 0.29
HMGA1P17096 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
HMGA1P17096 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 HCG11-201ENST00000411553 5696 ntBASIC16.87■□□□□ 0.29
HMGA1P17096 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 SPDYE19P-201ENST00000338590 713 ntBASIC16.87■□□□□ 0.29
HMGA1P17096 FO393414.2-201ENST00000405153 598 ntBASIC16.87■□□□□ 0.29
HMGA1P17096 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGA1P17096 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
HMGA1P17096 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGA1P17096 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGA1P17096 RN7SL692P-201ENST00000464677 288 ntBASIC16.87■□□□□ 0.29
HMGA1P17096 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGA1P17096 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGA1P17096 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
HMGA1P17096 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HMGA1P17096 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGA1P17096 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.87■□□□□ 0.29
HMGA1P17096 SRD5A3P1-201ENST00000603021 949 ntBASIC16.87■□□□□ 0.29
HMGA1P17096 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGA1P17096 AL358472.5-202ENST00000641448 1267 ntBASIC16.87■□□□□ 0.29
HMGA1P17096 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGA1P17096 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HMGA1P17096 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGA1P17096 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGA1P17096 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HMGA1P17096 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGA1P17096 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGA1P17096 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HMGA1P17096 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGA1P17096 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGA1P17096 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
HMGA1P17096 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGA1P17096 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGA1P17096 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGA1P17096 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGA1P17096 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGA1P17096 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
HMGA1P17096 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms