Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 BTBD7P1-201ENST00000447253 1453 ntBASIC19.25■□□□□ 0.67
HLA-DOAP06340 KRT8P12-202ENST00000472924 1397 ntBASIC19.25■□□□□ 0.67
HLA-DOAP06340 CALY-202ENST00000368555 783 ntTSL 2 BASIC19.25■□□□□ 0.67
HLA-DOAP06340 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 AC005034.1-201ENST00000426657 489 ntBASIC19.25■□□□□ 0.67
HLA-DOAP06340 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC19.25■□□□□ 0.67
HLA-DOAP06340 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
HLA-DOAP06340 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
HLA-DOAP06340 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC19.25■□□□□ 0.67
HLA-DOAP06340 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HLA-DOAP06340 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.24■□□□□ 0.67
HLA-DOAP06340 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 CROCCP1-201ENST00000426910 5675 ntBASIC19.24■□□□□ 0.67
HLA-DOAP06340 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.24■□□□□ 0.67
HLA-DOAP06340 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC19.24■□□□□ 0.67
HLA-DOAP06340 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC19.24■□□□□ 0.67
HLA-DOAP06340 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 SPDYE17-201ENST00000412399 783 ntBASIC19.24■□□□□ 0.67
HLA-DOAP06340 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC19.24■□□□□ 0.67
HLA-DOAP06340 AC135586.1-201ENST00000539323 574 ntBASIC19.24■□□□□ 0.67
HLA-DOAP06340 AL512361.1-201ENST00000554200 418 ntBASIC19.24■□□□□ 0.67
HLA-DOAP06340 AC010336.2-201ENST00000564226 506 ntBASIC19.24■□□□□ 0.67
HLA-DOAP06340 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC19.24■□□□□ 0.67
HLA-DOAP06340 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HLA-DOAP06340 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 AL662799.1-202ENST00000614205 422 ntBASIC19.24■□□□□ 0.67
HLA-DOAP06340 AL035252.4-201ENST00000624174 288 ntBASIC19.24■□□□□ 0.67
HLA-DOAP06340 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC19.24■□□□□ 0.67
HLA-DOAP06340 AL358472.5-202ENST00000641448 1267 ntBASIC19.24■□□□□ 0.67
HLA-DOAP06340 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
HLA-DOAP06340 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HLA-DOAP06340 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC19.24■□□□□ 0.67
HLA-DOAP06340 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HLA-DOAP06340 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
HLA-DOAP06340 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HLA-DOAP06340 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
HLA-DOAP06340 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.23■□□□□ 0.67
HLA-DOAP06340 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.23■□□□□ 0.67
HLA-DOAP06340 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
HLA-DOAP06340 POU5F1P6-201ENST00000466990 990 ntBASIC19.23■□□□□ 0.67
HLA-DOAP06340 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC19.23■□□□□ 0.67
HLA-DOAP06340 SPDYE22P-201ENST00000582158 798 ntBASIC19.23■□□□□ 0.67
HLA-DOAP06340 MIR4321-201ENST00000592276 80 ntBASIC19.23■□□□□ 0.67
HLA-DOAP06340 CECR7-204ENST00000609932 568 ntTSL 2 BASIC19.23■□□□□ 0.67
HLA-DOAP06340 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 AC004840.1-201ENST00000636359 365 ntBASIC19.23■□□□□ 0.67
HLA-DOAP06340 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HLA-DOAP06340 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.23■□□□□ 0.67
HLA-DOAP06340 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC19.23■□□□□ 0.67
HLA-DOAP06340 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.23■□□□□ 0.67
HLA-DOAP06340 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DOAP06340 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
HLA-DOAP06340 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.22■□□□□ 0.67
HLA-DOAP06340 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC19.22■□□□□ 0.67
HLA-DOAP06340 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms