Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 AC004263.2-201ENST00000617183 678 ntBASIC15.59■□□□□ 0.09
CLPTM1O96005 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CLPTM1O96005 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC15.59■□□□□ 0.09
CLPTM1O96005 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.59■□□□□ 0.09
CLPTM1O96005 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.59■□□□□ 0.09
CLPTM1O96005 KRT89P-201ENST00000620027 1478 ntBASIC15.59■□□□□ 0.09
CLPTM1O96005 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CLPTM1O96005 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CLPTM1O96005 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CLPTM1O96005 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
CLPTM1O96005 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.58■□□□□ 0.09
CLPTM1O96005 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
CLPTM1O96005 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.58■□□□□ 0.08
CLPTM1O96005 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 BX276092.5-203ENST00000456199 560 ntBASIC15.58■□□□□ 0.08
CLPTM1O96005 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC15.58■□□□□ 0.08
CLPTM1O96005 PPOX-214ENST00000535223 664 ntTSL 3 BASIC15.58■□□□□ 0.08
CLPTM1O96005 AL121672.3-201ENST00000608644 468 ntBASIC15.58■□□□□ 0.08
CLPTM1O96005 AC069148.1-201ENST00000608741 768 ntBASIC15.58■□□□□ 0.08
CLPTM1O96005 TUBB8P12-201ENST00000308911 1335 ntBASIC15.58■□□□□ 0.08
CLPTM1O96005 TUBB7P-202ENST00000428444 1305 ntBASIC15.58■□□□□ 0.08
CLPTM1O96005 TUBB8P7-204ENST00000567960 1332 ntBASIC15.58■□□□□ 0.08
CLPTM1O96005 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
CLPTM1O96005 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.58■□□□□ 0.08
CLPTM1O96005 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.58■□□□□ 0.08
CLPTM1O96005 AC016734.2-201ENST00000624325 1377 ntBASIC15.58■□□□□ 0.08
CLPTM1O96005 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.58■□□□□ 0.08
CLPTM1O96005 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.58■□□□□ 0.08
CLPTM1O96005 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.58■□□□□ 0.08
CLPTM1O96005 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
CLPTM1O96005 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 SBF1P1-201ENST00000444527 5631 ntBASIC15.58■□□□□ 0.08
CLPTM1O96005 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CLPTM1O96005 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.58■□□□□ 0.08
CLPTM1O96005 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
CLPTM1O96005 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLPTM1O96005 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.57■□□□□ 0.08
CLPTM1O96005 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CLPTM1O96005 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC15.57■□□□□ 0.08
CLPTM1O96005 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC15.57■□□□□ 0.08
CLPTM1O96005 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC15.57■□□□□ 0.08
CLPTM1O96005 NMU-205ENST00000511469 756 ntTSL 3 BASIC15.57■□□□□ 0.08
CLPTM1O96005 KRT8P26-201ENST00000534154 1276 ntBASIC15.57■□□□□ 0.08
CLPTM1O96005 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
CLPTM1O96005 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.57■□□□□ 0.08
CLPTM1O96005 AL353692.3-201ENST00000407031 1396 ntBASIC15.57■□□□□ 0.08
CLPTM1O96005 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CLPTM1O96005 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15.57■□□□□ 0.08
CLPTM1O96005 GGT4P-201ENST00000623672 1708 ntBASIC15.57■□□□□ 0.08
CLPTM1O96005 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
CLPTM1O96005 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.57■□□□□ 0.08
CLPTM1O96005 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLPTM1O96005 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
CLPTM1O96005 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.56■□□□□ 0.08
CLPTM1O96005 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLPTM1O96005 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLPTM1O96005 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.56■□□□□ 0.08
CLPTM1O96005 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms