Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 MCCD1P2-201ENST00000423228 335 ntBASIC15.62■□□□□ 0.09
PROM1O43490 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.62■□□□□ 0.09
PROM1O43490 POU5F1P6-201ENST00000466990 990 ntBASIC15.62■□□□□ 0.09
PROM1O43490 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
PROM1O43490 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.62■□□□□ 0.09
PROM1O43490 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.62■□□□□ 0.09
PROM1O43490 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.62■□□□□ 0.09
PROM1O43490 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
PROM1O43490 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
PROM1O43490 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
PROM1O43490 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
PROM1O43490 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.62■□□□□ 0.09
PROM1O43490 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.62■□□□□ 0.09
PROM1O43490 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.62■□□□□ 0.09
PROM1O43490 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PROM1O43490 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.61■□□□□ 0.09
PROM1O43490 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.61■□□□□ 0.09
PROM1O43490 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PROM1O43490 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PROM1O43490 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.61■□□□□ 0.09
PROM1O43490 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.61■□□□□ 0.09
PROM1O43490 AC004832.2-201ENST00000426397 482 ntBASIC15.61■□□□□ 0.09
PROM1O43490 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
PROM1O43490 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.61■□□□□ 0.09
PROM1O43490 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.61■□□□□ 0.09
PROM1O43490 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
PROM1O43490 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.61■□□□□ 0.09
PROM1O43490 AL078644.1-201ENST00000609881 752 ntBASIC15.61■□□□□ 0.09
PROM1O43490 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 AL691403.2-201ENST00000618460 490 ntBASIC15.61■□□□□ 0.09
PROM1O43490 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.61■□□□□ 0.09
PROM1O43490 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
PROM1O43490 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PROM1O43490 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.61■□□□□ 0.09
PROM1O43490 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
PROM1O43490 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.61■□□□□ 0.09
PROM1O43490 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.61■□□□□ 0.09
PROM1O43490 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PROM1O43490 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PROM1O43490 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
PROM1O43490 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.6■□□□□ 0.09
PROM1O43490 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
PROM1O43490 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PROM1O43490 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PROM1O43490 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.6■□□□□ 0.09
PROM1O43490 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.6■□□□□ 0.09
PROM1O43490 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
PROM1O43490 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.6■□□□□ 0.09
PROM1O43490 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.6■□□□□ 0.09
PROM1O43490 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.6■□□□□ 0.09
PROM1O43490 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PROM1O43490 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
PROM1O43490 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PROM1O43490 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
PROM1O43490 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PROM1O43490 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.6■□□□□ 0.09
PROM1O43490 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PROM1O43490 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
PROM1O43490 KRT18P34-201ENST00000488218 1270 ntBASIC15.6■□□□□ 0.09
PROM1O43490 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
PROM1O43490 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.6■□□□□ 0.09
PROM1O43490 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.6■□□□□ 0.09
PROM1O43490 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PROM1O43490 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PROM1O43490 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
PROM1O43490 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PROM1O43490 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PROM1O43490 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PROM1O43490 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PROM1O43490 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.6■□□□□ 0.09
PROM1O43490 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
PROM1O43490 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
PROM1O43490 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms