Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 PMS2P4-201ENST00000412466 1052 ntBASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 GPS2P2-201ENST00000430745 888 ntBASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 LINC01225-203ENST00000563550 1244 ntBASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDHGA3Q9Y5H0 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 TUBB3P1-201ENST00000405796 1332 ntBASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 AC055876.3-201ENST00000431496 288 ntBASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 IGHV3-62-201ENST00000520057 340 ntBASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 AC138649.4-201ENST00000612222 287 ntBASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA3Q9Y5H0 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 AC023824.1-201ENST00000562945 2975 ntBASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 BASP1P1-201ENST00000430708 665 ntBASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 KLF2P3-201ENST00000451977 1087 ntBASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 MIR3909-201ENST00000579518 119 ntBASIC16.03■□□□□ 0.16
PCDHGA3Q9Y5H0 AC138761.1-201ENST00000584393 385 ntBASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms