Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.59■□□□□ 0.41
SIX2Q9NPC8 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.58■□□□□ 0.41
SIX2Q9NPC8 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SIX2Q9NPC8 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SIX2Q9NPC8 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SIX2Q9NPC8 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.41
SIX2Q9NPC8 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.58■□□□□ 0.41
SIX2Q9NPC8 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SIX2Q9NPC8 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SIX2Q9NPC8 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SIX2Q9NPC8 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
SIX2Q9NPC8 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SIX2Q9NPC8 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.58■□□□□ 0.41
SIX2Q9NPC8 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 PRYP6-201ENST00000514804 343 ntBASIC17.58■□□□□ 0.4
SIX2Q9NPC8 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 AL161645.1-201ENST00000622716 1255 ntBASIC17.58■□□□□ 0.4
SIX2Q9NPC8 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
SIX2Q9NPC8 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 AC002056.1-201ENST00000395613 760 ntBASIC17.57■□□□□ 0.4
SIX2Q9NPC8 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX2Q9NPC8 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 AC023274.1-201ENST00000418278 595 ntBASIC17.56■□□□□ 0.4
SIX2Q9NPC8 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.56■□□□□ 0.4
SIX2Q9NPC8 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms